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185  structures 374  species 0  interactions 45347  sequences 102  architectures

Clan: Viral_Gag (CL0148)

Summary

Viral Gag protein Add an annotation

This clan contains Gag proteins which are involved in viral assembly and replication [1][2].

This clan contains 2 families and the total number of domains in the clan is 45347. The clan was built by J Mistry.

Literature references

  1. Hsu HW, Schwartzberg P, Goff SP; , Virology 1985;142:211-214.: Point mutations in the P30 domain of the gag gene of Moloney murine leukemia virus. PUBMED:2414902 EPMC:2414902
  2. Wehrly K, Chesebro B; , Methods 1997;12:288-293.: p24 antigen capture assay for quantification of human immunodeficiency virus using readily available inexpensive reagents. PUBMED:9245608 EPMC:9245608

Members

This clan contains the following 2 member families:

Gag_p24 Gag_p30

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
Gag_p24 (PF00607) 45086 (99.4%) View
Gag_p30 (PF02093) 261 (0.6%) View
Total: 2 Total: 45347 Clan alignment
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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