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47  structures 1555  species 0  interactions 2100  sequences 16  architectures

Clan: Peptidase_SH (CL0201)

Summary

Peptidase clan SH Add an annotation

This clan includes the serine peptidase assemblin from herpes virus as well as other viral peptidase families predicted to be related [1].

This clan contains 4 families and the total number of domains in the clan is 2100. The clan was built by A Bateman.

Literature references

  1. Cheng H, Shen N, Pei J, Grishin NV; , Protein Sci 2004;13:2260-2269.: Double-stranded DNA bacteriophage prohead protease is homologous to herpesvirus protease. PUBMED:15273316 EPMC:15273316

Members

This clan contains the following 4 member families:

Peptidase_S21 Peptidase_U35 Peptidase_U35_2 Peptidase_U9

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
Peptidase_U35 (PF04586) 1699 (80.9%) View
Peptidase_S21 (PF00716) 192 (9.1%) View
Peptidase_U35_2 (PF14550) 118 (5.6%) View
Peptidase_U9 (PF03420) 91 (4.3%) View
Total: 4 Total: 2100 Clan alignment
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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