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217  structures 4399  species 5  interactions 45644  sequences 1681  architectures

Clan: Pec_lyase-like (CL0268)

Summary

Pectate lyase-like beta helix Add an annotation

This superfamily all contain a right handed beta helix similar to that first found in pectate lyase [1].

This clan contains 22 families and the total number of domains in the clan is 45644. The clan was built by A Bateman.

Literature references

  1. Jenkins J, Mayans O, Pickersgill R; , J Struct Biol. 1998;122:236-246.: Structure and evolution of parallel beta-helix proteins. PUBMED:9724625 EPMC:9724625

Members

This clan contains the following 22 member families:

Adeno_E1B_55K Autotrns_rpt Beta_helix Chlam_PMP Chondroitinas_B Disaggr_assoc DUF1565 DUF3737 Fil_haemagg Fil_haemagg_2 Glyco_hydro_28 Glyco_hydro_49 Glyco_hydro_80 Glyco_hydro_92 Haemagg_act NosD Pec_lyase_C Pectate_lyase Pectate_lyase_3 Pectinesterase Pertactin PhageP22-tail

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
Autotrns_rpt (PF12951) 7020 (15.4%) View
Fil_haemagg (PF05594) 6916 (15.2%) View
Beta_helix (PF13229) 5365 (11.8%) View
Fil_haemagg_2 (PF13332) 4185 (9.2%) View
Glyco_hydro_28 (PF00295) 3587 (7.9%) View
Pectinesterase (PF01095) 2674 (5.9%) View
Pertactin (PF03212) 2661 (5.8%) View
Pectate_lyase_3 (PF12708) 2481 (5.4%) View
Glyco_hydro_92 (PF07971) 2270 (5.0%) View
Chlam_PMP (PF02415) 2166 (4.7%) View
Haemagg_act (PF05860) 2008 (4.4%) View
Pec_lyase_C (PF00544) 1509 (3.3%) View
continued
Pfam family Num. domains Alignment
NosD (PF05048) 1281 (2.8%) View
Pectate_lyase (PF03211) 678 (1.5%) View
DUF1565 (PF07602) 240 (0.5%) View
DUF3737 (PF12541) 223 (0.5%) View
Adeno_E1B_55K (PF01696) 139 (0.3%) View
Chondroitinas_B (PF14592) 114 (0.2%) View
PhageP22-tail (PF09251) 48 (0.1%) View
Disaggr_assoc (PF08480) 34 (0.1%) View
Glyco_hydro_49 (PF03718) 30 (0.1%) View
Glyco_hydro_80 (PF13647) 15 (0.0%) View
Total: 22 Total: 45644 Clan alignment
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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Interactions

There are 5 interactions for this clan. More...

Interacting families
A B
Pectinesterase Pectinesterase
PhageP22-tail PhageP22-tail
Glyco_hydro_28 fn3
Glyco_hydro_28
Pertactin Pertactin

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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