Sequence alignment for CL0281

PF06203

COL14_ARATH/357-401---R----DNAM..QRYKEKKKTRRYDK--TIRYETRKARAETRLRVKGRFVKATD
O23041_ARATH/289-333---R----EEAK..KRYFEKKKKRKFGK--QIRYESRKSTADTKKRMKGRFTKAGA
Q8L581_HORVD/298-342---R----EARV..LRYKEKKQARKFQK--TIRYATRKAYAEARPRIKGRFAKRSD
Q2QUI4_ORYSJ/96-140---R----QERI..EKYRSKRNHRNFER--KITYACRKTLADSRPRVKGRFARNST
Q7XC67_ORYSJ/222-266---R----EAKV..MRYKEKRKRRRYEK--QIRYASRKAYAEMRPRVKGRFAKVPD
Q4W1E8_9BRYO/301-345---R----EARV..MRCKEKRQKRKFEK--TIRYASRKAYAESRPRIKGRFTKRTD
Q5Q0A4_ARATH/215-259---R----KEKI..SKYRAKRNQRNFTK--TIKYACRKTLADSRPRIRGRFARNDE
Q9LY92_ARATH/260-304---R----EASL..LRYKEKRQNRLFSK--RIRYQVRKLNAEKRPRVKLRLNRSIP
Q6ZJ42_ORYSJ/255-299---R----AEKV..RRYKEKRQGRLFAK--RIRYEVRRLNAVKRPRLKVTNLSQPE
Q2R2A3_ORYSJ/1341-1385---R----FAAL..TRYREKKRNIKFIK--KADYSARKEVALRMKRSKGKFAPRVQ
O48883_BRANA/293-337---R----EARV..LRYREKKKRRKFEK--TIRYASRKAYAERRPRINGRFAKISE
Q6AVT1_ORYSJ/25-69---R----VASL..MRFREKRKERCFDK--KIRYSVRKEVAQKMKRRKGQFAGRAD
Q52ZI2_PEA/4-48---R----EAAL..LKFRQKRKERCFDK--KIRYVNRKQLAERRPRVRGQFVSKLN
Q2PEF4_LEMGI/569-613---R----VAAL..TKFRQKRKQRCFQK--KVRYQSRKKLAEQRPRIRGQFAKHTA
GAT25_ARATH/146-190---R----AQSL..DRFRKKRNARCFEK--KVRYGVRQEVALRMARNKGQFTSSKM
Q9LDL9_ARATH/139-183---R----KDRI..MRYLKKKNQRNFNK--TIKYVCRKTLADRRVRVRGRFARNND
Q6J3Q5_MARPO/200-244---R----LASL..TRFREKRKERCYDK--KIRYTVRKEVAQRMQRKKGQFASSRT
Q23T84_TETTS/702-746---R----REKI..TKYKIKRDKRASFR--KISYDVRKRVADSRLRVKGRFVTKEQ
Q5Z857_ORYSJ/410-456---R----EGSMLKLRHKQKQCTPLLSN--KTRYQSRKVNAECRPRVKGKYVSQAS
Q5QMF4_ORYSJ/188-232---R----KERI..ERYRVKRHQRNFNK--KITYACRKTLADSRPRVKGRFARNGE
Q6Z8Z8_ORYSJ/393-437---R----QRAV..QRYKEKKSNRRFVK--QIMYASRKATADTRRRVRGRFVKASL
Q5IFM9_OSTTA/297-341---R----LERL..KRWKEKRKNRNFNK--VIRYQSRKACADSRPRVKGKFVRVSS
Q5MX75_LOLTE/307-351---R----EAKV..LRYKEKKKTRTFEK--TTRYATKKAYAEARPRIKGRFAKISE
Q23TX3_TETTS/254-297---R----RQKI..EKYLIKKLTRKWD.--VLRYEVRKKIAKTRQRVKGRFVKEEK
Q1KMT9_ORYSJ/428-472---R----EASV..MRYKEKRRTRLFSK--KIRYQVRKVNADCRPRMKGRFVRSPS
Q5IFN7_OSTTA/473-517---R----AAAI..RRFLKKRKERNFDK--KVRYASRQQLAASRPRLRGQFVRNAE
Q2HTB9_MEDTR/581-625---R----EAAL..TKFRLKRKDRCYDK--KVRYESRKRQAENRPRVKGQFVRQVQ
Q67WB9_ORYSJ/294-338---R----EARL..MRYREKRKNRRFEK--TIRYASRKAYAETRPRIKGRFAKRAD
Q5VRH5_ORYSJ/172-216---R----NRAK..LRYNDKKKTRKFSK--QIKYACRKAGADARKRVKGRFAKASS
COL11_ARATH/276-320---R----DEAK..KRYKQKKSKRMFGK--QIRYASRKARADTRKRVKGRFVKSGE
Q5XF38_ARATH/361-405---R----EARV..SRYREKRRTRLFSK--KIRYEVRKLNAEKRPRMKGRFVKRAS
Q8H6P2_BRANI/274-318---R----KARV..LRYREKKKTRKFEK--RIRYASRKEYAEKRPRIKGRFAXRNE
COL13_ARATH/287-331---R----NSAL..SRYKEKKKSRRYEK--HIRYESRKVRAESRTRIRGRFAKAAD
O82118_ORYSJ/350-394---R----DNAL..TRYKEKKKRRKFDK--KIRYASRKARADVRKRVKGRFVKAGE
Q5Z4U5_ORYSJ/182-226---R----VASL..MRFREKRKERNFDK--KIRYSVRKEVALRMQRNRGQFTSSKP
Q235M5_TETTS/882-926---R----KQKI..KNYQDKRKRRSWQK--KISYDVRKKVADGRLRVKGRFVTKKQ
O82112_ORYSJ/358-402---R----NLVI..SRYKEKRKTRRFDR--QVRYESRKARADSRLRIKGRFAKVNQ
Q32QD0_HORVS/625-669---R----VAAV..NKFREKRKERNFGK--KVRYQSRKRLAEQRPRVRGQFVRQPP
Q84RF0_ARATH/270-314---R----EEAK..QRYFEKKRSRKFVK--AHRYESRAQTAAKKKRSRGRFVKNDD
O22786_ARATH/341-385---R----KEKI..RRYMKKRNERNFNK--KIKYACRKTLADSRPRVRGRFAKNDE
Q68I23_HORVU/22-66---R----EANV..MMYREKRKRRRYDK--QIRYEARKAYAELRPRVNGRFVKIPE
Q2PEF3_LEMGI/444-488---R----EAAL..MKFRLKRKDRCFEK--KVRYHSRKMLAEQRPRVKGQFVRQTA

PF09425

TIF4B_ARATH/233-262QANR....KVSL--QRYLEKRKDRRFSKTKKAPGVA--------------------
TI11A_ARATH/181-207RIAR....RASL--HRFFAKRKDRAVA...RAPYQV--------------------
TIF6A_ARATH/259-285PQTR....KASL--ARFLEKRKERVIN...VSPYYV--------------------
Q69NY7_ORYSJ/155-183PAASGLSMKRSL--QRFLEKRKTRA.....AAPLYA--------------------
Q69P94_ORYSJ/177-203PIAR....RNSL--HRFLEKRKGRMNA...NAPYQA--------------------
Q6ZJU3_ORYSJ/343-369PQAR....KASL--ARFLEKRKERVSS...VAPYPS--------------------
Q7XEZ1_ORYSJ/117-144PIAR....KASL--QRFLQKRKHRITTT..SEPYKK--------------------
Q7XEZ6_ORYSJ/123-150PVAR....KASL--QRFMEKRKGRLAAR..GQPYRR--------------------
Q7XV97_ORYSJ/135-161PLTR....TKSL--QRFLSKRKERLTS...LGPYQV--------------------
Q84R94_ORYSJ/164-190PQAR....KASL--HRFLEKRKDRLQA...KAPYQG--------------------
Q8GRS2_ORYSJ/153-179PIAR....KVSL--QRFLEKRKNRIVV...AEPLPE--------------------
Q8GSA8_ORYSJ/119-145PIMR....KASL--QRFFAKRKDRLAA...TTPYAR--------------------
Q8GSI0_ORYSJ/115-142PIAR....KASL--KRFLAKRKATPASA..RSSYVV--------------------
GAT24_ARATH/141-167P.QR....LASL--LRFREKRKGRNFDK..TIRYTV--------------------
Q9AXP7_IPONI/153-180PIAR....RSSL--ARFLEKRKDRITSK..AAPYQK--------------------
TIF3B_ARATH/139-165PIAR....RHSL--QRFLEKRRDRLVN...KNPYPT--------------------
TIF3A_ARATH/197-223PIAR....RRSL--QRFFEKRRHRFVH...TKPYSA--------------------
Q9M723_SOLLC/175-201AMAR....RATL--ARFLEKRKHRLIK...ARPYLY--------------------

This alignment is coloured according to the ClustalX colouring scheme:

 
Glycine (G)
 
Proline (P)
 
Small or hydrophobic (A,V,L,I,M,F,W)
 
Hydroxyl or amine amino acids (S,T,N,Q)
 
Charged amino-acids (D,E,R,K)
 
Histidine or tyrosine (H,Y)

For UniProt-based alignments, we also add some additional mark-up to the alignments where appropriate. Active site information is shown as follows:

 
Active site (residue annotated in SwissProt as an active site)
 
Predicted active site (residue aligns in a Pfam alignment with a SwissProt active site)
 
Predicted active site (residue annotated in SwissProt as a potential active site)

Some UniProt sequences can be mapped to protein structures, in which case we also show the secondary structure definition. These lines are shown below the sequence to which they apply and are marked (SS). The meaning of each of the symbols is as follows:

C
Random coil
H
Alpha-helix
G
3(10) helix
I
Pi-helix
E
Hydrogen bonded beta-strand (extended strand)
B
Residue in isolated beta-bridge
T
H-bonded turn (3-turn, 4-turn, or 5-turn)
S
Bend (five-residue bend centered at residue i)
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