Sequence alignment for CL0284

PF08261

ALL8_CARMA/1-8--AGP--YAFGL-
ALL16_CARMA/1-8--GGP--YSYGL-

PF05953

ALLP_HELAM/161-171KRLPM..YNFGLG
ALLP_HELAM/183-193KRYSK..FNFGLG
O96499_BLAGE/97-107KRSKM..YGFGLG
Q1AHE3_MACRS/59-69KRHND..YVFGLG
Q1AHE3_MACRS/103-113KKSGT..YNFGLG
Q1AHE3_MACRS/151-161EKRGQ..YAFGLG
Q1AHE3_MACRS/168-178KRSKT..FSFGLG
Q1AHE3_MACRS/295-305TRPGQ..YAFGLG
Q1AHE3_MACRS/393-403KRPQH..YAFGLG
Q1AHE3_MACRS/567-577KRENQ..YAFGLG
Q1AHE3_MACRS/600-610KKSRP..YAFGLG
Q1DH34_AEDAE/79-89VRSPK..YNFGLG
Q29BZ8_DROPS/57-67KRVER..YAFGLG
Q3LI53_PROCL/68-78KRTPN..YAFGLG
Q3LI53_PROCL/477-487KKAGQ..YSFGLG
Q3LI53_PROCL/488-498KRSGP..YSFGLG
Q5ZQK7_SPOFR/50-60KRSPH..YDFGLG
Q8WQ55_GRYBI/136-146KRSRP..FGFGLG
Q8WQ55_GRYBI/218-230KRGPDHRFAFGLG
Q94742_SCHGR/127-138KRGPR.TYSFGLG
ALLS_DROME/139-149TRPQP..FNFGLG

This alignment is coloured according to the ClustalX colouring scheme:

 
Glycine (G)
 
Proline (P)
 
Small or hydrophobic (A,V,L,I,M,F,W)
 
Hydroxyl or amine amino acids (S,T,N,Q)
 
Charged amino-acids (D,E,R,K)
 
Histidine or tyrosine (H,Y)

For UniProt-based alignments, we also add some additional mark-up to the alignments where appropriate. Active site information is shown as follows:

 
Active site (residue annotated in SwissProt as an active site)
 
Predicted active site (residue aligns in a Pfam alignment with a SwissProt active site)
 
Predicted active site (residue annotated in SwissProt as a potential active site)

Some UniProt sequences can be mapped to protein structures, in which case we also show the secondary structure definition. These lines are shown below the sequence to which they apply and are marked (SS). The meaning of each of the symbols is as follows:

C
Random coil
H
Alpha-helix
G
3(10) helix
I
Pi-helix
E
Hydrogen bonded beta-strand (extended strand)
B
Residue in isolated beta-bridge
T
H-bonded turn (3-turn, 4-turn, or 5-turn)
S
Bend (five-residue bend centered at residue i)
Close window