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23  structures 2109  species 2  interactions 6978  sequences 67  architectures

Clan: TolB_N (CL0342)

Summary

TolB, N-terminal domain Add an annotation

Members of this superfamily appear to behave like the N-terminal fold of the TolB transport-portal complex protein, which is beta-stranded.

This clan contains 6 families and the total number of domains in the clan is 6978. The clan was built by A Bateman.

Members

This clan contains the following 6 member families:

CsgG DUF330 DUF3897 DUF799 Lipoprotein_16 TolB_N

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
DUF330 (PF03886) 1859 (26.6%) View
TolB_N (PF04052) 1688 (24.2%) View
CsgG (PF03783) 1246 (17.9%) View
DUF3897 (PF13036) 1082 (15.5%) View
Lipoprotein_16 (PF03923) 800 (11.5%) View
DUF799 (PF05643) 303 (4.3%) View
Total: 6 Total: 6978 Clan alignment
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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Interactions

There are 2 interactions for this clan. More...

Interacting families
A B
TolB_N TolB_N
PD40

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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