Sequence alignment for CL0345

PF01117

AERA_AERSO/120-474GDEVDVQWRLVHDNDYF.IKPVSYL.AHYLGYAWVGGNHSPYVG.EDMDVTRV....GD.GWLIKGNNDGG...CSGYR.
A0KFE5_AERHH/119-477GDEVDVQWRLVHDSANF.IKPTSYL.AHYLGYAWVGGNHSQYVG.EDMDVTRD....GD.GWVIRGNNDGG...CEGYR.
Q6LFZ2_PHOPR/115-467NDVLTVEWDLIN.QVEF.YQPWARL.ANALGFAWAGGTRSKYAG.EDMVVTRQ....SDHDFLVTGYNNGN...CNGYR.
A3US09_VIBSP/117-474NSNLEVQRALVNDDTNF.IRPLSYL.AHSLGYAWVSGNNGRYVG.QDMAIEQL....SH.GWEIKGNNNGS...CTGER.
A7MVX4_VIBHB/117-475GSTTEIEHNLVASDENF.VRPISYL.AHTLGYAWLSGNQGKFVG.DDMVVNRV....NG.SWEIQGNSDGS...CNGDR.
Q8GI65_CLOSE/55-422EDNEDLKAKIIQ.DPEF.IRNWANV.AHSLGFGWCGGTANPNVG.QGFEFKREVGAGGKVSYLLSARYNPNDPYASGYR.
A3D2W6_SHEB5/44-411PDLDSLKNDAIN.DPSF.ISSLFSL.GHHLGYAWAGGTASQYVG.EDIEVRRE....SSNEYSLKARYNGNDPYESGYR.
A3UR86_VIBSP/116-477GSEIDVEYDLVNNRNDF.VRPLSYL.AHNLGYAWVGGNNSQYVG.EDMTIKRS....GD.SWVIQGNNSGS...CDGYR.
A6AKR3_VIBHA/117-476GGEIDVQYELVTDRSYF.VRPLSYL.AHYLGYAWVGGNNSQYVG.EDMKIDRV....GD.GWVIQGNNSGS...CSGYR.
ENT_ENTCO/116-464FDPADEISEITHQEESADIKPVRLLDARLLGYTWVTQNHSWIVAYSDEPI.......KDGNEVVTLRNIGNNNFCDALRK
A7S1J2_NEMVE/168-462QSLDDVKTRVMDET....MAELALL.AHYLGYGWCASCRAQFVG.EDF..RRN....GD.SW..EADRKGP...CNGYM.
Q2SGB9_HAHCH/44-412QDIAALKDTIVR.DPDF.YVPLTYL.AHFLGYGWCGGTASQNVG.EDFSITRN....GDQQYTLQANYNGSDPYSGGYW.
A7SFW2_NEMVE/192-549TSLSEVKTRVMDTA....MNPLARL.AHYLGYGWCASCRAEWVG.EDF..RRN....GD.SW..EADKKGP...CDGYK.
A5KXA7_9GAMM/117-475NSNLEVQRALVNDDANF.VRPLAYL.ANNLGYAWVGGDNGRYVG.QDMGINQV....HS.GWEIKGNSNGS...CSGDR.

PF03318

Q57398_CLOPF/66-302-------------------NYLKRM-EKYYPNAMAYFDKV...TINPQGNDFY---------------------------
Q45471_LYSSH/64-325-------------------NGSRFL-VNYYGRYLT.SNGLGSIGKHPENIDFE---------------------------
Q3ZVK9_SPICI/76-314-------------------LKGNIF-EEKTYAANYRNEKDGDYIWDDNLQEGY---------------------------
Q45475_LYSSH/60-285-------------------PPLFGF-LPYSRFPYIFGESVDVSGINI......---------------------------
Q3F160_BACTI/40-273-------------------NDTVTI-PETKVFQTT..................---------------------------
A7IZR5_BACTU/38-278-------------------SEKQID-TSIITSTHP..................---------------------------
Q2L856_BACTU/99-335-------------------HQTNRF-ISWFKDNIA.SSKGYNSIAEQMGLKIE---------------------------
Q3F161_BACTI/42-283-------------------SDSVAV-PKTVIFNVN..................---------------------------
Q45728_BACTU/80-315-------------------GYTANT-SGLMAEGTD..................---------------------------
A3IDZ0_9BACI/64-287-------------------PPIAGF-RPYLRTPVF.GEDVEYSGINF......---------------------------
Q0ZST4_9DIPT/57-270-------------------ISVNVN-NMVINEMTS..................---------------------------
C15AA_BACUT/40-265-------------------GNIEVE-PGNLNFSVV..................---------------------------
A8M593_SALAI/31-275-------------------TDLNSL-IESHSSTYV.....PLGFLPVHTLSIS---------------------------
Q9KKG8_BACTU/23-245-------------------VKSTYD-PSFKVFNES..................---------------------------
Q5PXQ3_BACUD/47-287-------------------TPLTGN-VNVTNQSVT..................---------------------------

PF01117

AERA_AERSO/120-474CGEKSSIKVSNFSYTLEPDSFSHGQVTESGKQLVKTITANATNYTDLPQQ.VVVTLKYDKATNW.....SKTDTYSLS--
A0KFE5_AERHH/119-477CGEKTAIKVSNFAYNLDPDSFKHGDVTQSDRQLVKTVVGWAINDSDTPQSGYDVTLRYDTATNW.....SKTNTYGLS--
Q6LFZ2_PHOPR/115-467CDERLKMEFTNFNYEVEPSTLWVGKKVESDKESYGYIVGYAKNASSTMQQ.RRLTYSYSESTNW.....SKTDTYKYS--
A3US09_VIBSP/117-474CNEKTTITVDNFSYVLDNTEFWHGSVEETDQDLVNTLTAYAINKTDQPKQ.IIVDLHFKQSTQW.....SKTQHFDLA--
A7MVX4_VIBHB/117-475CDEKTKITIQDFAYHLNPKHFSRSDVTESTKEKLTTITAYAINTQDRPKH.INVQFDVDQSTSW.....YKTDHSVFA--
Q8GI65_CLOSE/55-422AKDRLSMRISNVRFVIDNDSIKLGTPKVKKLAPLNSASFDLINESKTESK.LSKTFNYTTSKTV.....SKTDNFKFG--
A3D2W6_SHEB5/44-411ANERLKVNLQNIHFVTNPQSLKLGSPQVYDREAIYTAPVVIYNWGDTEDT.GVATLNYDYTTSW.....AKTDNFSFS--
A3UR86_VIBSP/116-477CNEKTKITVDNFTYTVNDNNFWHGDVVESDRELVKTVYATARNRSDIAQQ.VVVDLKVDESTNW.....SKTNSYGFS--
A6AKR3_VIBHA/117-476CGEKTKITVNNFAYTLNDKNFWHGEVIESERELVDTVWATARNYSNTPQQ.IVVDLKLTESTNW.....SKTNSYGFA--
ENT_ENTCO/116-464CTDKSACIHQYLQFAWN....SFGDPTVRTRQVVFEVVGWADSDTTNNNS.DTLFYRTTQADNWQVLTESKTNTIGLA--
A7S1J2_NEMVE/168-462NHHRLKMHYRDFKFGVK..NIVYGKPVIQTLKPQSYISGSERNNED....HEVTRTVSEQVE................--
Q2SGB9_HAHCH/44-412ADKRLKMSLSDLKFYTNPGSLKLGDPQVYDREPLKTITAVVYNRGDTEDT.AVATLQYDETKSW.....SKQEDYSFS--
A7SFW2_NEMVE/192-549SDHRLKMHFGDFKFGIK..KITYGNPVIQSMKPEVYYSGTVRNDDPTPLIHKVER....EVRDVRTVTHTATSSWKVA--
A5KXA7_9GAMM/117-475CNEKTTITVDNFSYTLDSQGFSYGNVKETDQELINTLSAYAINETDQPKQ.IIVDLHFLQSTHW.....NKTNRFDLA--

PF03318

Q57398_CLOPF/66-302--------------INNPKVELDGEPSMNYLEDVYVGKALLTNDTQQEQKLKSQSFTCKNTDTV-----TATTTHTVG..
Q45471_LYSSH/64-325--------------VKNTYGKLSMEPQVISQNPLWAGQSDLRNDTDRDQTLSSQEFRKSFSNTT-----TATTEHGFM..
Q3ZVK9_SPICI/76-314--------------LQEKCIVNIREITNISEIELDHSHDVLTNNSDIEQDLSTSSYSRQQTVGH-----SLT........
Q45475_LYSSH/60-285--------------.........ENTNVTSVVPLFIGSNTFENTTDRTMTFNTVSFSKSITDST-----TTQTLNGFK..
Q3F160_BACTI/40-273--------------.................PIPIASALTITENRSSQTQLHTIKFSEKKMESV-----TNTTVHGFKIG
A7IZR5_BACTU/38-278--------------....RLIPHDLTIPQNLETIFTTTQVLTNNTDL.QQSQTVSFAKKTTTTT-----STSTTNGWTEG
Q2L856_BACTU/99-335--------------AENDMDVTNIDYTSKTGDTIYNGISELKNYTGSTQKMKTDSFQRDYTKSE-----STSVTNGLQ..
Q3F161_BACTI/42-283--------------.................PTPYTGPNIISENNTDVNQNKRIKFSEKVVETT-----THTTTKGFKIG
Q45728_BACTU/80-315--------------......LTEEIDSVAYATPYIADSYTFTNDGPITQEYQTLAYEQAVETST-----SNTTTHGCRVG
A3IDZ0_9BACI/64-287--------------.........KQNNVTNVVPIFMGENTFVNNSELEQTFNTTSFSESITKST-----STSIQSGFK..
Q0ZST4_9DIPT/57-270--------------......ILRSGETRKDKVLLRTGVFIVKNTGNSQVEAQSQSYAYKKTHTE-----SVSIANTKG..
C15AA_BACUT/40-265--------------................PELDFSVSQDLFNNTSV.QQSQTASFNESRTETT-----STAVTHGVKSG
A8M593_SALAI/31-275--------------AQESAAVPVGTPKVVTGTPYYLGCATLANHTSITQTMKSNSFRRDYTNTV-----STTVTTGVS..
Q9KKG8_BACTU/23-245--------------......VTPQFTEIPTEPVNNQLTTKRVDNTGSYPVESTVSFTWTETHTE-----TSAVTEGVKAG
Q5PXQ3_BACUD/47-287--------------......ILDDLDSIATLTPEYVYDNYFSNDTSTEKTYQTLSFEKDVQTTV-----STTVTHGFQIG

PF01117

AERA_AERSO/120-474--EKVTTKNKFQWP.LVG....ETELAIE--IAASQSW-----ASQ.KGGSTTETVSVEARPTVPPHSSLPVRVALYKSN
A0KFE5_AERHH/119-477--EKVTTKNKFKWP.LVG....ETELSIE--IAANQSW-----ASQ.NGGSTTTSLSQSVRPTVPARSKIPVKIELYKAD
Q6LFZ2_PHOPR/115-467--EKVTSKSKFKFP.LIG....ETELSLE--LGAEQSF-----ATT.DGKSSQKTISDVAVVNVPPHTQIPVFLKIEKAT
A3US09_VIBSP/117-474--DSVVIDETFHWP.QVG....KTEVRVA--LEEGQRF-----SDT.NSGARFEPTELQAIITVPAHSVLPFQVEFLRST
A7MVX4_VIBHB/117-475--QSVYISDAFQWP.KIG....NTHPNVS--VDANQLF-----SDF.NSGTSTSSANREANLTIPAHSILPIQIELYRSH
Q8GI65_CLOSE/55-422--EKIGVKTSFKVG.LEAIADSKVETSFE--FNAEQGW-----SNT.NSTTETKQESTTYTATVSPQTKKRLFLDVLGSQ
A3D2W6_SHEB5/44-411--EKIGVTNKYEVG.IPGIGGASSEISAE--FSASQGW-----SET.DGKSTTISSQAQYRAIMPPRSKRYISITLFKQK
A3UR86_VIBSP/116-477--ESVQTENTFKWP.LVG....ETKLTIK--LEANQSF-----AET.NGNSTSEQVTLQARPMVPANSELPIRVELYRST
A6AKR3_VIBHA/117-476--QQVKTENEFKWP.LVG....KTKLSIT--FDANQSF-----SNS.NGASTSKDVTLQARPMVPANSELPVRIELYRST
ENT_ENTCO/116-464--EVDWFNFKYET.........KQEVSIE--I.ARQTW-----TSTLNAGVSTVSR....VPKVPIKVK..INVDTFLKV
A7S1J2_NEMVE/168-462--.....KHAYRHP...............--.......-----...............HDNQLVEKNTWSRYRVKLHPSR
Q2SGB9_HAHCH/44-412--ETISIKNTYEFD.LKIFGG.STEITAG--FTANQGW-----SES.NGNSETVTQSAQYRALMPANSKRIITLTVFKQK
A7SFW2_NEMVE/192-549--HELGIEVSYTPPGATGGVGGKVSYKFN--YESSSTT-----TDT.NTNTQWFIDKVMSEKTLAPHTAAEYRIMLTRTR
A5KXA7_9GAMM/117-475--DVVLMDEDFNWP.QAG....KTDVRVV--LENGQNF-----SDI.NSGQRSEASDLQAILTVPARSVLPFRVEFLRST

PF03318

Q57398_CLOPF/66-302..TSIQATAKFTVPF......NETGVSLT..TS..YSF...ANTNTNTNSKEITHNVPSQDILVPANTTVEVIAYLKKVN
Q45471_LYSSH/64-325..FGTETSLATGIPF.....LAEGKITLK..AE..YNF...SSSQANETSETVEYVAPSQSIVVPPHTIARVVAVLEIKK
Q3ZVK9_SPICI/76-314..LGAKISTTFDITA....YVLDTKISAE..I.........SASDTWTDTVTDTYNAPSQKVNVPAHSEIDVDYYFYKTV
Q45475_LYSSH/60-285..TAFEASGKVGIPL.....VAEGQIKTT..LE..YNF...SHTNSNTKSVTTTYTVPPQPIPVPPHTKTRTDVYLNQVS
Q3F160_BACTI/40-273GAIKVGAKGTVTANFLVSGGTAEANVELS..LTGEYNY....SSTTANVNQTEKTWEITENVSVASHTSLTSQLIIMQAD
A7IZR5_BACTU/38-278GKISDTLEEKVSVSIPF...IGEGGGKNS..TTIEANFAHNSSTTTFQQASTDIEWNISQPVLVPPRKQVVATLVIMGGN
Q2L856_BACTU/99-335..LGFKVAAKGVVAL......AGADFETS..VT..YNL...STTTTETNTISDKFTVPSQEVTLPPGHKAIVKHDLRKMV
Q3F161_BACTI/42-283GGIKSTTKGTLKLKFPVGELGFEQTLELP..LTGEYN....SSSTTGNTCANEKLWEITDNITVPPHSRVTSTLIIMKTE
Q45728_BACTU/80-315STFGYSRNSTFTAKIR....DTEKGFHLD..VGAEYDF...TNTNTFTTSTTTNVLVPSQVITVPSYCTAYVTMVLNKAT
A3IDZ0_9BACI/64-287..SSITTKGKVGIPF.....VAEGEVSAT..LE..FNL...STTITDTISTTSTITANSQAVKVPPNKIYKAEVYFEKKS
Q0ZST4_9DIPT/57-270......LTGAIKFPV.....IDNFSPTLS......FSN...TETTTQTESVEELVTIPPQKVLLNPKKQKKVNYNLYREE
C15AA_BACUT/40-265..VTVSASAKFNAKILVK..SIEQTITTT..VSTEYNF....SSTTTRTNTVTRGWSIAQPVLVPPHSRVTATLQIYKGD
A8M593_SALAI/31-275..TTNKVSGSFKLSE.....VTNIGIEQS..VTISY.....QNANTQTSAVRETHTAPSQTVTVPAGQTRYVVASLTPTT
Q9KKG8_BACTU/23-245TSISTKQSFKFG........FVNSDVTLT..VSAEYNY....STTNTTTTTETHTWSDSTKVTIPPKTYVEAAYIIQNGT
Q5PXQ3_BACUD/47-287GKLGAEVKGSVSIPF.....VADGGVTVSAEISGQYNF...SSADTETTTTSQKLIIPSQSGNIRPGYTTRVQIMLAKIN

PF01117

AERA_AERSO/120-474IS-YPYEFKAEVNYDL..TMKGFLRWGGNAWY.THPD.........NRPTWEHTLL..LGPFRGQGEQHPLPVDKRYIPG
A0KFE5_AERHH/119-477IS-YPYEFKADVSYDL..TLSGFLRWGGNAWY.THPD.........NRPNWNHTFV..IGPYKDKASSIRYQWDKRYIPG
Q6LFZ2_PHOPR/115-467VD-YPYKFNAQVSYDV..TLTSFMRWGGNALL.SHDE.........NRPTKSITYT..VGRGSTPATNLLYQYQHPHTPL
A3US09_VIBSP/117-474IS-YPYRIKTNMSYDV..SFTGFLRYSGNALS.SHPT.........NRPTVSHTFT..MGTTSEDQANIRYQWDHRYIPG
A7MVX4_VIBHB/117-475IL-YPFRIRTDISYRV..RFDGFLRHSGNAWH.THPE.........NRPTTSHMFT..MGRASELSENIRYQWDHRYIPG
Q8GI65_CLOSE/55-422ID-IPYEGKIYMEYDI..ELMGFLRYTGNARE.DHTE.........DRPTVKLKFG...KNGMSAEEHLKDLYSHKNING
A3D2W6_SHEB5/44-411AD-VPYTSSLYMMYDI..KYENFLKWGGNAHI.NHPT.........NRPNFPYTFGGANANNLNGPEALVDQYLHQDING
A3UR86_VIBSP/116-477IS-YPYRFNADISYDV..EFNGFLRWGGNAWH.SHPD.........NRPYKAHTFT..MGRSSNESADIRYQWDHRYIPG
A6AKR3_VIBHA/117-476IS-YPYRFNADISYDV..NFNGFLRWSGNAWH.THPD.........NRPYRSHTFT..MGRGSEQSADIRYQWDHRYIPG
ENT_ENTCO/116-464LF-AVYKADL...YDIFLQFASVFKKGGNRQYWLNYT.........QEPNTKSNYN..HKIYNDKIRYLQEDVQVHPNET
A7S1J2_NEMVE/168-462CN-RR.............ELDGFLRWGGGKDG.DSTNYHYEHRGSNRRPTFKYKFG..D......SSTPFYSALKKQSDR
Q2SGB9_HAHCH/44-412AD-IPYESEMVLGYNV..AMENFLRWGGNARN.DHPT.........DRPWENYTFG..ARNNLNGAEDILDQYAHRSIQN
A7SFW2_NEMVE/192-549TT-VPYTATIIAHFSA..ELDGFLRWGGGYNG.DSTNYHYQHRGSGSRPTVKYRFG..D......ASTPLYQDLKEKSTR
A5KXA7_9GAMM/117-475IS-YPYRIKANMSYDV..NFTGFLRYSGNALV.SHPT.........NRPTVSHTFT..MGTNSEEHANIRYQWDHRYIPG

PF03318

Q57398_CLOPF/66-302VK.GNVKLVG--------QVSGSEWG...........---------------------......EIPSYLAFPRDG....
Q45471_LYSSH/64-325IK.GEMDIYA--------EVGLNKEK.FGY..EELPI---------------------SSMGGLKWVSLGSIYEEAYNQ.
Q3ZVK9_SPICI/76-314DQ.VDTWLYK--------KY.................---------------------DTYQLIYIVWPPEYFRDVVVEP
Q45475_LYSSH/60-285IS.GNVEIYA--------...................---------------------......DAITGIKAESSGTVIS
Q3F160_BACTI/40-273IR.VPMILNS--------NLIGKRYY........DDY---------------------ANMFFSYIFQSKTSGRTEMISP
A7IZR5_BACTU/38-278FT.IPMDLMT--------TIDSTEH............---------------------..YSGYPILTWISSPDNSYNGP
Q2L856_BACTU/99-335YS.GTHDLKG--------DL.................---------------------..........IVSFNDKEIVQK
Q3F161_BACTI/42-283VR.VPMELTT--------NLRGTNSSGEGSFPTSNGL---------------------FSYTTSARGTVGGIFVSYYVRP
Q45728_BACTU/80-315YAKADVPLIT--------TLSGRFFI.DE........---------------------......TDNSDEYFDIYPYVEL
A3IDZ0_9BACI/64-287TS.GTVEIYT--------...................---------------------......DVFTSVRVLNDGTIYS
Q0ZST4_9DIPT/57-270LE.QKYTLEF--------TV.................---------------------......DPSSSFTVTRSYSVPA
C15AA_BACUT/40-265FT.VPVLLSL--------RVYGQTGT.LAGNP.....---------------------......SFPSLYAATYENTLLG
A8M593_SALAI/31-275YS.GTLALNT--------SLSGPFVG...........---------------------......VPRINPDLVHFLDLYN
Q9KKG8_BACTU/23-245YN.VPVNVEC--------DMSGTLFC.RG........---------------------..............YRDGALIA
Q5PXQ3_BACUD/47-287IPQTAVHFSG--------SMSGTVHR.DPIPS.....---------------------......SVIGLVDYDLYDEVRS

PF01117

AERA_AERSO/120-474EVKWWDWNWTISE.YGLSTMQNNLG....RVL.RPIRSAVTGDFY-AESQFAGDIEIGQPQTRSAK.....AAQLRSASA
A0KFE5_AERHH/119-477EVKWWDWNWTIQQ.NGLSTMQNNLA....RVL.RPVRAGITGDFS-AESQFAGNIEIGAPVPLAAD.....SKVRRTRSV
Q6LFZ2_PHOPR/115-467GTDFWDWSWLVDK.HGKDALKWAVS....DAL.RPIKTKVSGDFH-ADSSYVADVTYLADEPFYGN.......DERAGRV
A3US09_VIBSP/117-474EMKWWDWSWAINT.NGLSSMQYAAG....ASV.RPFYSHVSGQFS-AESQYSGMIDIGAEHSVDSF.....DTTTFNNHE
A7MVX4_VIBHB/117-475ETKWWDWSWAIHT.HGLALMQYAAG....ESL.RPYHSHVSGTFE-AESQYAGMIDVGQELTVDAP....LHWAEGSTPQ
Q8GI65_CLOSE/55-422YSE.WDWKWVDEK......FGYLFKNSYDALTSRKLGGIIKGSFT-NINGTKIVIREGKEIPLPDK....KRRGKRSVDS
A3D2W6_SHEB5/44-411YGV.WDWPAAISSAQSKSGFEWQLA....NIV.RQHGAPISGKFT-AIDSSQFNIDASESYPLTDE.....DIANRPKSA
A3UR86_VIBSP/116-477ETKWWDWGWAIKE.AGLSSMQYATG....GSL.RPFHSYVSGDFN-AESQFAGTIEIGQATPITNSVRSKRSVDSV.NET
A6AKR3_VIBHA/117-476EVKWWDWSWAIRE.AGLGSMQYATG....ASL.RPFHSYVSGDFY-AESQYAGTIEIGQPSPLGLRA...RSTDTLSGGT
ENT_ENTCO/116-464QSKWWWWSFKKVA......LTTMTV....VALTRFKASGINGQYI-SARQFSGG.ETVSPYRLAAPFD.....SCLWRRS
A7S1J2_NEMVE/168-462SMRPWEWHEMKAR......YSHAQTLINALTDESKYEFTLTGQFE-DVIGHHVDI.HWSTTSLKVPRGLERTLAETHFPK
Q2SGB9_HAHCH/44-412YGQ.WDWNWMLNE.YGAGGVKWAVG....NISKRRFIAPLTGKFT-TVDGSQFNIDASAPISLDGDEMQMAQQSARTKRS
A7SFW2_NEMVE/192-549NIRPWQWHDMTSR......YQYAQSLINQLADERLYEFTLTGQFE-DVAGQDASV.LWKTVSLNGKRSVEE.....DFPT
A5KXA7_9GAMM/117-475EMKWWDWSWAINE.YGLSSMQYAAG....ASV.RPFYSYVSGQFS-AESQYSGMIDIGAEHSVDSF....DVVNILTNHK

PF03318

Q57398_CLOPF/66-302YKFSLSDTVNKSD------L.....----NEDGTI.NINGKGNYS.AVMGDELIVKVRNL--------------------
Q45471_LYSSH/64-325AKLSGTHEFPDIK------IISRSV----NNPDYF.LASGKGRFE.SEYGSLFNVQVEYI--------------------
Q3ZVK9_SPICI/76-314SFAVLYYVYELID------GIKKFE----NTDWIF..NIPNGYLQ.EKDGD.YYIKSTMP--------------------
Q45475_LYSSH/60-285IGDGLNLASNTYG------LIRSP.----QDPDRV.RAIGSGKFN.LIHGADFTAITYDI--------------------
Q3F160_BACTI/40-273ASRLANQSWPGKP------IVFKSG----GSNGSL.NLSGFGYSD.LYKGLYAFIRYTET--------------------
A7IZR5_BACTU/38-278FMSWYFANWPNLP------SGFGPL----NSDNTV.TYTGSVVSQ.VSAGVYATVRFDQY--------------------
Q2L856_BACTU/99-335FIYPNYREINLSD------IRETMI----EIDEWN.HVNPVNFYE.LV.GVKNHIKNGET--------------------
Q3F161_BACTI/42-283ASALYNTSWPDKP------ATFNSI----GSNESL.NLLGSGYSD.VVPSLYVTIRQDQT--------------------
Q45728_BACTU/80-315VTTCCTGNCSQCV------TDQLQL----DAVNRTVIFDGLGSFE.ANIASNELIVRTKL--------------------
A3IDZ0_9BACI/64-287IGSVLDKATNKYG------LIKSP.----NDSKRV.RAKGTGNFK.IEHGADLIVKVYDV--------------------
Q0ZST4_9DIPT/57-270GSHPATTSETLNL------VAFLRK----RHENGK.GFNNSNYIK.YDYNTNKLMIKNYT--------------------
C15AA_BACUT/40-265RIREHIAPPALFR------ASNAYI----SNGVQA.IWRGTATTR.VSQGLYSVVRIDER--------------------
A8M593_SALAI/31-275YFVTTTGKGATLP------TGFSLN----SSTRTL.DFKGTGTYT.LVAGVNFTARVMEK--------------------
Q9KKG8_BACTU/23-245AVYVSVADLADYN------PNLNLT----NKGDGIAHFKGSGFIE.GAQGLRSIIQVTEY--------------------
Q5PXQ3_BACUD/47-287LENNCSNSTVGRD------TGLVLN----NANQSV.DFSGSGFFTGSITAFNFYVKITEY--------------------

PF01117

AERA_AERSO/120-474EEVALT....SVDLDSEALAN
A0KFE5_AERHH/119-477DGAGQGLRL.EIPLDAQELSG
Q6LFZ2_PHOPR/115-467RRSVGSAPI.ATK...EELEQ
A3US09_VIBSP/117-474TYYAGDIKI.VTDFAPDTLAQ
A7MVX4_VIBHB/117-475QIQVGNVTV.LTDFDARSLEQ
Q8GI65_CLOSE/55-422LDARLQNEG.IRIENIETQDV
A3D2W6_SHEB5/44-411QKLGLSRNIQVAVGEIQNNDE
A3UR86_VIBSP/116-477TERIGDIEV.TTNFNADELSD
A6AKR3_VIBHA/117-476TQRVGDVEV.TTNFDASKLSA
ENT_ENTCO/116-464PNPLGTDGL.KVALAHHPLAG
A7S1J2_NEMVE/168-462IKRTSSKRV.FPKPPEERLSM
Q2SGB9_HAHCH/44-412LGGNLEMEI.VRVDDYSYDDT
A7SFW2_NEMVE/192-549DGTEDPPRV.FPKPPTVVLTP
A5KXA7_9GAMM/117-475TYYAGDITV.VTDFDPEALDR

PF03318

Q57398_CLOPF/66-302----------NTNNVQEYVIP
Q45471_LYSSH/64-325----------STKSNEVIKTE
Q3ZVK9_SPICI/76-314----------ISYENDGTKFE
Q45475_LYSSH/60-285----------TSGEASARIID
Q3F160_BACTI/40-273----------PLDRYSSPGKT
A7IZR5_BACTU/38-278----------DIHNLRTIEKT
Q2L856_BACTU/99-335----------LYIDTPAKFMF
Q3F161_BACTI/42-283----------PLSGYPGETKT
Q45728_BACTU/80-315----------.VDNVTGATIS
A3IDZ0_9BACI/64-287----------TAPSTKA.LVE
Q0ZST4_9DIPT/57-270----------AVRNVVNDIVE
C15AA_BACUT/40-265----------PLAGYSGETRT
A8M593_SALAI/31-275----------LPSGMSPGSCV
Q9KKG8_BACTU/23-245----------PLDDNKGRSTP
Q5PXQ3_BACUD/47-287----------PINNSSQENIR

This alignment is coloured according to the ClustalX colouring scheme:

 
Glycine (G)
 
Proline (P)
 
Small or hydrophobic (A,V,L,I,M,F,W)
 
Hydroxyl or amine amino acids (S,T,N,Q)
 
Charged amino-acids (D,E,R,K)
 
Histidine or tyrosine (H,Y)

For UniProt-based alignments, we also add some additional mark-up to the alignments where appropriate. Active site information is shown as follows:

 
Active site (residue annotated in SwissProt as an active site)
 
Predicted active site (residue aligns in a Pfam alignment with a SwissProt active site)
 
Predicted active site (residue annotated in SwissProt as a potential active site)

Some UniProt sequences can be mapped to protein structures, in which case we also show the secondary structure definition. These lines are shown below the sequence to which they apply and are marked (SS). The meaning of each of the symbols is as follows:

C
Random coil
H
Alpha-helix
G
3(10) helix
I
Pi-helix
E
Hydrogen bonded beta-strand (extended strand)
B
Residue in isolated beta-bridge
T
H-bonded turn (3-turn, 4-turn, or 5-turn)
S
Bend (five-residue bend centered at residue i)
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