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36  structures 5100  species 3  interactions 199771  sequences 162  architectures

Clan: BPD_transp_1 (CL0404)

Summary

BPD transporter like Add an annotation

This clan contains families that are involved in transport of molecules across membranes. It includes the bacterial binding protein-dependent transport system inner membrane component, Pfam:PF00528, which is ATP dependent system involved in transport of a range of substrates [1-2].

This clan contains 4 families and the total number of domains in the clan is 199771. The clan was built by J Mistry and RD Finn.

Literature references

  1. Higgins CF, Hyde SC, Mimmack MM, Gileadi U, Gill DR, Gallagher MP; , J Bioenerg Biomembr 1990;22:571-592.: Binding protein-dependent transport systems. PUBMED:2229036 EPMC:2229036
  2. Ames GF;, Annu Rev Biochem. 1986;55:397-425.: Bacterial periplasmic transport systems: structure, mechanism, and evolution. PUBMED:3527048 EPMC:3527048

Members

This clan contains the following 4 member families:

BPD_transp_1 DUF1430 FtsX YjgP_YjgQ

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
BPD_transp_1 (PF00528) 156339 (78.3%) View
FtsX (PF02687) 37091 (18.6%) View
YjgP_YjgQ (PF03739) 5380 (2.7%) View
DUF1430 (PF07242) 961 (0.5%) View
Total: 4 Total: 199771 Clan alignment
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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Interactions

There are 3 interactions for this clan. More...

Interacting families
A B
BPD_transp_1 ABC_tran
BPD_transp_1
SBP_bac_1

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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