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187  structures 401  species 3  interactions 2356  sequences 45  architectures

Clan: BIR-like (CL0417)

Summary

BIR-like domains Add an annotation

Clan of domains all involved in binding nucleic acid and sharing the sequence motif C3HC.

This clan contains 3 families and the total number of domains in the clan is 2356. The clan was built by J Mistry and RD Finn.

Members

This clan contains the following 3 member families:

BIR Rsm1 zf-C3HC

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
BIR (PF00653) 1889 (80.2%) View
zf-C3HC (PF07967) 278 (11.8%) View
Rsm1 (PF08600) 189 (8.0%) View
Total: 3 Total: 2356 Clan alignment
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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Interactions

There are 3 interactions for this clan. More...

Interacting families
A B
BIR PP2C
BIR
Peptidase_C14

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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