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54  structures 364  species 1  interaction 5909  sequences 35  architectures

Clan: Prolamin (CL0482)

Summary

Di-sulfide bond pairrings Add an annotation

This superfamily is characterised by families with only slightly differing disulfide-bonding patterning.

This clan contains 5 families and the total number of domains in the clan is 5909. The clan was built by P Coggill.

Literature references

  1. Zhang D;, Cell Cycle. 2009;8:3428-3430.: Homology between DUF784, DUF1278 domains and the plant prolamin superfamily typifies evolutionary changes of disulfide bonding patterns. PUBMED:19806031 EPMC:19806031

Members

This clan contains the following 5 member families:

Gliadin Hydrophob_seed LTP_2 Prolamin_like Tryp_alpha_amyl

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
Gliadin (PF13016) 2134 (36.1%) View
Tryp_alpha_amyl (PF00234) 1632 (27.6%) View
LTP_2 (PF14368) 1249 (21.1%) View
Hydrophob_seed (PF14547) 532 (9.0%) View
Prolamin_like (PF05617) 362 (6.1%) View
Total: 5 Total: 5909 Clan alignment
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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Interactions

There is 1 interaction for this clan. More...

Interacting families
A B
Tryp_alpha_amyl Tryp_alpha_amyl

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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