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193  structures 1181  species 2  interactions 1635  sequences 14  architectures

Clan: Nribosyltransf (CL0498)

Summary

N-(deoxy)ribosyltransferase-like superfamily Add an annotation

This superfamily includes the N-deoxyribosyltransferase and ADP-ribosyl cyclase-like families as well as the family that includes the hypothetical protein PA1492 for which the structure is known. PA1942 has a very similar putative active site and is predicted by SCOP to have a deoxyribosyltransferase activity [1].

This clan contains 4 families and the total number of domains in the clan is 1635. The clan was built by A Bateman.

Literature references

  1. Andreeva A, Howorth D, Chandonia JM, Brenner SE, Hubbard TJ, Chothia C, Murzin AG;, Nucleic Acids Res. 2008;36:D419-D425.: Data growth and its impact on the SCOP database: new developments. PUBMED:18000004 EPMC:18000004

Members

This clan contains the following 4 member families:

DUF1937 DUF4406 Nuc_deoxyrib_tr Rib_hydrolayse

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
Nuc_deoxyrib_tr (PF05014) 1106 (67.6%) View
DUF4406 (PF14359) 334 (20.4%) View
Rib_hydrolayse (PF02267) 149 (9.1%) View
DUF1937 (PF09152) 46 (2.8%) View
Total: 4 Total: 1635 Clan alignment
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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Interactions

There are 2 interactions for this clan. More...

Interacting families
A B
Rib_hydrolayse Rib_hydrolayse
Nuc_deoxyrib_tr Nuc_deoxyrib_tr

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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