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43  structures 2438  species 1  interaction 18381  sequences 484  architectures

Clan: Pentapeptide (CL0505)

Summary

Pentapeptide repeat Add an annotation

This clan includes proteins that form a four sided parallel beta helix. They are generally compoased of pentapeptide repeat motifs.

This clan contains 3 families and the total number of domains in the clan is 18381. The clan was built by A Bateman.

Members

This clan contains the following 3 member families:

Pentapeptide Pentapeptide_3 Pentapeptide_4

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
Pentapeptide (PF00805) 11082 (60.3%) View
Pentapeptide_4 (PF13599) 6775 (36.9%) View
Pentapeptide_3 (PF13576) 524 (2.9%) View
Total: 3 Total: 18381 Clan alignment
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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Interactions

There is 1 interaction for this clan. More...

Interacting families
A B
Pentapeptide Pentapeptide

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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