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0  structures 262  species 0  interactions 10309  sequences 851  architectures

Clan: GAG-polyprotein (CL0523)

Summary

LTR-copia-type polyprtien segments Add an annotation

This superfamily is characterised by family members that ar derived from retrotransposons of the copia-type.

This clan contains 7 families and the total number of domains in the clan is 10309. The clan was built by P Coggill.

Members

This clan contains the following 7 member families:

DUF1759 DUF4219 PNMA Retrotrans_gag UBN2 UBN2_2 UBN2_3

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
Retrotrans_gag (PF03732) 4914 (47.7%) View
UBN2 (PF14223) 1538 (14.9%) View
UBN2_2 (PF14227) 1112 (10.8%) View
DUF1759 (PF03564) 975 (9.5%) View
UBN2_3 (PF14244) 858 (8.3%) View
DUF4219 (PF13961) 657 (6.4%) View
PNMA (PF14893) 255 (2.5%) View
Total: 7 Total: 10309 Clan alignment
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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