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4  structures 5014  species 0  interactions 53746  sequences 109  architectures

Clan: MviN_MATE (CL0222)

Summary

MviN, MATE-like superfamily Add an annotation

This superfamily consists of a variety of integral membrane protein families. The MATE family are known to be transporters. Other proteins have been implicated in virulence and polysaccharide biosynthesis.

This clan contains 6 families and the total number of domains in the clan is 53746. The clan was built by A Bateman.

Members

This clan contains the following 6 member families:

MatE MVIN Polysacc_synt Polysacc_synt_3 Polysacc_synt_C Rft-1

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
MatE (PF01554) 32381 (60.2%) View
Polysacc_synt (PF01943) 9954 (18.5%) View
Polysacc_synt_C (PF14667) 5970 (11.1%) View
MVIN (PF03023) 3361 (6.3%) View
Polysacc_synt_3 (PF13440) 1715 (3.2%) View
Rft-1 (PF04506) 365 (0.7%) View
Total: 6 Total: 53746 Clan alignment
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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