Please note: this site relies heavily on the use of javascript. Without a javascript-enabled browser, this site will not function correctly. Please enable javascript and reload the page, or switch to a different browser.
18  structures 2048  species 5  interactions 9306  sequences 106  architectures

Clan: Phage_barrel (CL0504)

Summary

Phage tail beta-barrel superfamily Add an annotation

This superfamily consists of a variety of bacteriophage protein families. Structurally members of this family contain a beta barrel.

This clan contains 8 families and the total number of domains in the clan is 9306. The clan was built by A Bateman.

Members

This clan contains the following 8 member families:

DUF2001 Gifsy-2 Minor_tail_Z Phage-tail_1 Phage-tail_2 Phage-tail_3 Phage_attach Phage_GPD

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

Loading domain graphics...

Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
Phage_GPD (PF05954) 5310 (57.1%) View
Phage-tail_3 (PF13550) 1924 (20.7%) View
Minor_tail_Z (PF06763) 914 (9.8%) View
Phage_attach (PF05354) 548 (5.9%) View
Gifsy-2 (PF13856) 319 (3.4%) View
DUF2001 (PF09393) 231 (2.5%) View
Phage-tail_1 (PF09097) 31 (0.3%) View
Phage-tail_2 (PF09096) 29 (0.3%) View
Total: 8 Total: 9306 Clan alignment
 

Please note: Clan alignments can be very large and can cause problems for some browsers. Read the note above before viewing.

Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

Tree controls

Hide

This tree shows the occurrence of the domains in this clan across different species. More...

Loading...

Interactions

There are 5 interactions for this clan. More...

Interacting families
A B
Phage-tail_2 Gp5_OB
Phage-tail_1
DUF2001 DUF2001
Phage-tail_1 Gp5_OB
Phage-tail_2

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

Loading structure mapping...