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280  structures 6187  species 9  interactions 8189  sequences 32  architectures

Clan: RBP11-like (CL0509)

Summary

RBP11-like subunits of RNA polymerase Add an annotation

This superfamily is characterised by all members carrying RNA Polymerase alpha subunit, chain A, domain 2. The member families form homo- and hetero-dimers.

This clan contains 2 families and the total number of domains in the clan is 8189. The clan was built by P Coggill.

Members

This clan contains the following 2 member families:

RNA_pol_L RNA_pol_L_2

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
RNA_pol_L (PF01193) 7433 (90.8%) View
RNA_pol_L_2 (PF13656) 756 (9.2%) View
Total: 2 Total: 8189 Clan alignment
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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Interactions

There are 9 interactions for this clan. More...

Interacting families
A B
RNA_pol_L RNA_pol_Rpb2_6
RNA_pol_Rpb1_2
RNA_pol_A_bac
RNA_pol_L
RNA_pol_N
DNA_RNApol_7kD
RNA_pol_Rpb8
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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