Please note: this site relies heavily on the use of javascript. Without a javascript-enabled browser, this site will not function correctly. Please enable javascript and reload the page, or switch to a different browser.
91  structures 4816  species 1  interaction 43065  sequences 154  architectures

Clan: RND_permease (CL0322)

Summary

RND permease superfamily Add an annotation

Different members of the RND superfamily have been shown to transport hydrophobic drugs, fatty acids, bile salts, organic solvents, heavy metals, autoinducers and lipooligosaccharides in bacteria [1].

This clan contains 6 families and the total number of domains in the clan is 43065. The clan was built by A Bateman.

Literature references

  1. Tseng TT, Gratwick KS, Kollman J, Park D, Nies DH, Goffeau A, Saier MH Jr; , J Mol Microbiol Biotechnol. 1999;1:107-125.: The RND permease superfamily: an ancient, ubiquitous and diverse family that includes human disease and development proteins. PUBMED:10941792 EPMC:10941792

Members

This clan contains the following 6 member families:

ACR_tran GerA MMPL Patched SecD_SecF Sterol-sensing

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

Loading domain graphics...

Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
ACR_tran (PF00873) 19835 (46.1%) View
MMPL (PF03176) 10072 (23.4%) View
SecD_SecF (PF02355) 8057 (18.7%) View
Patched (PF02460) 2194 (5.1%) View
GerA (PF03323) 1955 (4.5%) View
Sterol-sensing (PF12349) 952 (2.2%) View
Total: 6 Total: 43065 Clan alignment
 

Please note: Clan alignments can be very large and can cause problems for some browsers. Read the note above before viewing.

Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

Tree controls

Hide

This tree shows the occurrence of the domains in this clan across different species. More...

Loading...

Interactions

There is 1 interaction for this clan. More...

Interacting families
A B
ACR_tran ACR_tran

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

Loading structure mapping...