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46  structures 752  species 1  interaction 52586  sequences 796  architectures

Clan: Retroviral_zf (CL0511)

Summary

Retrovirus zinc finger-like domains Add an annotation

This superfamily has zinc-finger domains from GAG proteins, HIV nucleocapsids, nucleocapsid proteins from mason-pfizer monkey virus, and from other nucleic-acid binding proteins. Sometimes the domains appears in duplicate.

This clan contains 6 families and the total number of domains in the clan is 52586. The clan was built by P Coggill.

Members

This clan contains the following 6 member families:

zf-CCHC zf-CCHC_2 zf-CCHC_3 zf-CCHC_4 zf-CCHC_5 zf-CCHC_6

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
zf-CCHC (PF00098) 50986 (97.0%) View
zf-CCHC_4 (PF14392) 629 (1.2%) View
zf-CCHC_3 (PF13917) 384 (0.7%) View
zf-CCHC_6 (PF15288) 289 (0.5%) View
zf-CCHC_2 (PF13696) 190 (0.4%) View
zf-CCHC_5 (PF14787) 108 (0.2%) View
Total: 6 Total: 52586 Clan alignment
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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Interactions

There is 1 interaction for this clan. More...

Interacting families
A B
zf-CCHC zf-CCHC

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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