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44  structures 372  species 3  interactions 5553  sequences 96  architectures

Clan: SNARE (CL0212)

Summary

SNARE-like superfamily Add an annotation

This clan includes part of the SNARE like superfamily.

This clan contains 7 families and the total number of domains in the clan is 5553. The clan was built by A Bateman.

Members

This clan contains the following 7 member families:

Clat_adaptor_s Gryzun Gryzun-like Sedlin_N Sybindin TRAPPC10 TRAPPC9-Trs120

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
Clat_adaptor_s (PF01217) 3187 (57.4%) View
Sedlin_N (PF04628) 687 (12.4%) View
Sybindin (PF04099) 676 (12.2%) View
TRAPPC9-Trs120 (PF08626) 449 (8.1%) View
Gryzun (PF07919) 282 (5.1%) View
TRAPPC10 (PF12584) 265 (4.8%) View
Gryzun-like (PF12742) 7 (0.1%) View
Total: 7 Total: 5553 Clan alignment
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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Interactions

There are 3 interactions for this clan. More...

Interacting families
A B
Clat_adaptor_s Adap_comp_sub
Adaptin_N
Sedlin_N TRAPP

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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