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148  structures 5009  species 10  interactions 18121  sequences 350  architectures

Clan: UBA (CL0214)

Summary

UBA superfamily Add an annotation

This superfamily includes domains related to the UBA domain. These domains are often involved in ubiquitin binding.

This clan contains 9 families and the total number of domains in the clan is 18121. The clan was built by A Bateman.

Members

This clan contains the following 9 member families:

CUE DMA DUF1296 RuvA_C TAP_C UBA UBA_2 UBA_3 UBA_4

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
UBA (PF00627) 9566 (52.8%) View
RuvA_C (PF07499) 4234 (23.4%) View
UBA_4 (PF14555) 1716 (9.5%) View
CUE (PF02845) 1581 (8.7%) View
TAP_C (PF03943) 365 (2.0%) View
DMA (PF03474) 284 (1.6%) View
UBA_2 (PF08587) 138 (0.8%) View
UBA_3 (PF09288) 131 (0.7%) View
DUF1296 (PF06972) 106 (0.6%) View
Total: 9 Total: 18121 Clan alignment
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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Interactions

There are 10 interactions for this clan. More...

Interacting families
A B
RuvA_C AAA
RuvA_N
UBA GTP_EFTU
Pkinase
UQ_con
ubiquitin
UBA
EF_TS
CUE ubiquitin
CUE

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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