Please note: this site relies heavily on the use of javascript. Without a javascript-enabled browser, this site will not function correctly. Please enable javascript and reload the page, or switch to a different browser.
3  structures 2112  species 0  interactions 3558  sequences 8  architectures

Clan: YNI (CL0444)

Summary

YcfA-nrd-intein domain Add an annotation

This superfamily is characterised by a short approx. 55 residue fold that is found in domains associated with flagellum formation and a short region withiin the homing endonucleases.

This clan contains 3 families and the total number of domains in the clan is 3558. The clan was built by P Coggill.

Literature references

  1. Eletsky A, Sukumaran DK, Xiao R, Acton TB, Rost B, Montelione GT, Szyperski T;, Proteins. 2009;76:1037-1041.: NMR structure of protein YvyC from Bacillus subtilis reveals unexpected structural similarity between two PFAM families. PUBMED:19455708 EPMC:19455708

Members

This clan contains the following 3 member families:

DUF905 FlaG YcfA

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

Loading domain graphics...

Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
YcfA (PF07927) 2133 (59.9%) View
FlaG (PF03646) 905 (25.4%) View
DUF905 (PF06006) 520 (14.6%) View
Total: 3 Total: 3558 Clan alignment
 

Please note: Clan alignments can be very large and can cause problems for some browsers. Read the note above before viewing.

Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

Tree controls

Hide

This tree shows the occurrence of the domains in this clan across different species. More...

Loading...

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

Loading structure mapping...