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25  structures 1982  species 1  interaction 2593  sequences 7  architectures

Clan: YbjQ-like (CL0522)

Summary

YbjQ-like superfamily Add an annotation

This superfamily is characterised by chains that form pentamers. Family structures are beta/alpha-propellers with additional short beta-strands that promote oligomeric assembly. Family members appear to be heavy-metal binding proteins.

This clan contains 2 families and the total number of domains in the clan is 2593. The clan was built by P Coggill.

Members

This clan contains the following 2 member families:

SeleniumBinding YbjQ_1

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
YbjQ_1 (PF01906) 2580 (99.5%) View
SeleniumBinding (PF11524) 13 (0.5%) View
Total: 2 Total: 2593 Clan alignment
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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Interactions

There is 1 interaction for this clan. More...

Interacting families
A B
YbjQ_1 YbjQ_1

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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