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2  structures 2526  species 0  interactions 5640  sequences 5  architectures

Clan: YjbJ-CsbD-like (CL0406)

Summary

YjbJ-CsbD-like superfamily Add an annotation

CsbD is a bacterial general stress response protein. It's expression is mediated by sigma-B, an alternative sigma factor [1]. The role of CsbD in stress response is unclear. YjbJ is a hypothetical protein with a similar structure.

This clan contains 2 families and the total number of domains in the clan is 5640. The clan was built by RD Finn.

Literature references

  1. Pragai Z, Harwood CR; , Microbiology 2002;148:1593-1602.: Regulatory interactions between the Pho and sigma(B)-dependent general stress regulons of Bacillus subtilis. PUBMED:11988534 EPMC:11988534

Members

This clan contains the following 2 member families:

CsbD DUF883

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
CsbD (PF05532) 3357 (59.5%) View
DUF883 (PF05957) 2283 (40.5%) View
Total: 2 Total: 5640 Clan alignment
 

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Family relationships

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Species distribution

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Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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