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33  structures 391  species 2  interactions 617  sequences 16  architectures

Clan: tRNA-IECD_N (CL0476)

Summary

tRNA-intron endonuclease catalytic domain-like N-term Add an annotation

This superfamily contains families of the N-termini of tRNA-splicing endonucleases.

This clan contains 2 families and the total number of domains in the clan is 617. The clan was built by P Coggill.

Members

This clan contains the following 2 member families:

tRNA_int_end_N2 tRNA_int_endo_N

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
tRNA_int_endo_N (PF02778) 347 (56.2%) View
tRNA_int_end_N2 (PF12928) 270 (43.8%) View
Total: 2 Total: 617 Clan alignment
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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Interactions

There are 2 interactions for this clan. More...

Interacting families
A B
tRNA_int_endo_N tRNA_int_endo
tRNA_int_endo_N

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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