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43  structures 4877  species 2  interactions 13679  sequences 35  architectures

Clan: tRNA_bind_arm (CL0298)

Summary

tRNA-binding arm superfamily Add an annotation

This domain is found in Phe and Ser tRNA synthetases at the N-terminus, and at the C-terminus of Val tRNA synthetase. The domain is composed of two helices.

This clan contains 3 families and the total number of domains in the clan is 13679. The clan was built by A Bateman.

Members

This clan contains the following 3 member families:

Phe_tRNA-synt_N Seryl_tRNA_N Val_tRNA-synt_C

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
Seryl_tRNA_N (PF02403) 5178 (37.9%) View
Phe_tRNA-synt_N (PF02912) 4298 (31.4%) View
Val_tRNA-synt_C (PF10458) 4203 (30.7%) View
Total: 3 Total: 13679 Clan alignment
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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Interactions

There are 2 interactions for this clan. More...

Interacting families
A B
Val_tRNA-synt_C Val_tRNA-synt_C
Seryl_tRNA_N tRNA-synt_2b

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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