HMMER3/b [3.0 | March 2010] NAME TNFR_c6 ACC PF00020.13 DESC TNFR/NGFR cysteine-rich region LENG 39 ALPH amino RF no CS yes MAP yes DATE Sat Oct 6 02:57:31 2012 NSEQ 37 EFFN 8.152466 CKSUM 3785113078 GA 20.60 20.60; TC 20.60 20.60; NC 20.50 20.50; BM hmmbuild HMM.ann SEED.ann SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq STATS LOCAL MSV -8.3430 0.71952 STATS LOCAL VITERBI -9.0666 0.71952 STATS LOCAL FORWARD -3.8880 0.71952 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 2.94280 1.86570 2.93877 2.61844 3.73790 3.02837 3.52149 3.84358 2.69212 3.19454 4.33902 2.95154 3.25486 2.87078 2.97401 2.68723 2.57790 3.21863 5.25932 3.38448 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00461 5.77857 6.50092 0.61958 0.77255 0.00000 * 1 5.88188 0.02191 6.95631 7.03096 7.27086 5.82356 7.49876 7.29484 7.10818 6.71511 7.93428 7.01467 6.53291 7.38024 6.90570 6.15945 6.41742 6.79372 7.89771 7.49430 1 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00461 5.77857 6.50092 0.61958 0.77255 0.48576 0.95510 2 2.54185 5.78517 2.93159 1.97234 5.13086 3.09344 3.26427 3.64946 2.24521 3.31014 4.82567 3.51388 2.29268 2.69882 2.40114 2.44673 3.04896 3.61170 6.21749 4.80616 2 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00461 5.77857 6.50092 0.61958 0.77255 0.48576 0.95510 3 2.92337 5.78393 2.13243 1.72196 5.12898 2.90654 4.23413 3.79637 2.09057 3.58341 4.82460 3.51450 2.27227 2.69716 3.46166 2.75334 3.15992 4.17455 6.21662 3.38696 3 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00461 5.77857 6.50092 0.61958 0.77255 0.48576 0.95510 4 3.29087 5.80388 2.66480 2.97474 5.14929 1.32510 3.57928 4.63589 2.59927 4.10898 4.84514 1.96010 4.45393 2.93924 2.79984 2.31764 3.18156 4.19484 6.23563 4.82366 4 - T 2.68643 4.42250 2.77544 2.73108 3.46378 2.40537 3.72519 3.29379 2.67650 2.69379 4.24714 2.90371 2.73710 3.18126 2.89825 2.37873 2.77544 2.98438 4.58501 3.61528 0.23846 1.55753 6.50092 0.31326 1.31327 0.48576 0.95510 5 3.27590 5.73087 3.16255 1.88645 3.03840 4.05856 2.86920 4.52349 2.50212 2.93265 3.71537 3.53529 4.45147 2.34779 3.48098 2.52242 1.86298 4.10925 6.17738 2.96398 7 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00461 5.77857 6.50092 0.61958 0.77255 0.48576 0.95510 6 6.06501 6.82030 6.68735 6.75534 1.24070 6.34434 4.84101 5.56774 6.51360 4.59990 6.04367 5.81259 6.58023 6.02681 6.21786 5.78192 6.23962 5.55089 4.90171 0.42698 8 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00461 5.77857 6.50092 0.61958 0.77255 0.48576 0.95510 7 3.31340 3.44695 3.96958 3.05052 4.36779 4.23024 4.46146 3.16717 3.06828 2.42909 3.44456 2.91543 3.80776 2.36035 3.15113 2.20186 1.92140 3.09430 3.78389 2.53191 9 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00461 5.77857 6.50092 0.61958 0.77255 0.48576 0.95510 8 2.38674 5.78705 1.50978 2.29631 5.13326 3.20884 2.41237 3.84367 2.73554 4.09282 4.82743 3.11597 3.57832 2.71748 2.79793 2.50390 3.50478 4.17830 6.21903 4.80733 10 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.50076 5.77857 0.93947 0.61958 0.77255 0.48576 0.95510 9 2.64328 5.40989 2.84414 2.22482 4.71261 3.79825 3.25444 3.29481 2.74410 3.12829 4.46193 3.28434 3.26263 2.82138 2.58692 1.90506 3.23799 2.65898 5.86878 2.81357 11 - S 2.68632 4.42239 2.77533 2.73137 3.46368 2.40526 3.72508 3.29368 2.67754 2.69330 4.24703 2.90360 2.73753 3.18160 2.89814 2.37842 2.77533 2.98474 4.58213 3.61517 0.17480 1.84572 6.00771 0.52058 0.90184 0.28922 1.38169 10 2.75688 5.73858 2.85380 1.90891 5.08454 3.33909 3.11136 4.57113 1.85074 4.04424 4.77901 3.07194 3.17961 2.43186 3.41358 2.59072 2.62333 3.40297 3.00122 4.75925 14 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00499 5.69950 6.42184 0.61958 0.77255 0.30420 1.33833 11 1.95041 5.66552 3.58662 3.03113 4.96324 1.99460 3.49739 4.41547 3.02861 3.36398 4.72174 1.35900 4.47092 2.96675 3.17356 3.27286 2.84385 3.42708 6.13066 4.75237 15 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.24816 5.77857 1.52937 0.61958 0.77255 0.48576 0.95510 12 3.18667 3.22041 4.26094 3.68805 3.41690 4.21386 1.55594 3.27663 3.62146 2.60557 3.91035 2.84980 4.58952 2.39514 3.92147 2.98990 2.54610 2.56718 3.78177 2.89254 16 - T 2.68581 4.42255 2.77550 2.73154 3.46220 2.40543 3.72525 3.29384 2.67771 2.69299 4.24720 2.90377 2.73770 3.18177 2.89788 2.37887 2.77550 2.98405 4.58507 3.61438 0.45215 1.01659 6.25863 0.22333 1.60870 0.24565 1.52417 13 3.26149 5.76528 2.25778 2.20903 3.13824 3.13247 4.22369 4.59139 2.49568 3.15293 3.44057 3.16984 2.19918 3.32095 2.19236 2.27644 3.08301 4.15436 6.19970 4.79049 19 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.13613 5.75870 2.08656 0.61958 0.77255 0.42049 1.06923 14 2.64410 5.66298 3.46726 2.65988 3.45391 3.98083 2.50067 2.51159 2.36870 3.24013 4.70877 3.01081 2.83768 2.04852 2.55282 2.84067 2.69878 4.04318 6.10742 4.70847 20 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00524 5.65055 6.37289 0.61958 0.77255 0.25022 1.50791 15 5.88188 0.02191 6.95631 7.03096 7.27086 5.82356 7.49876 7.29484 7.10818 6.71511 7.93428 7.01467 6.53291 7.38024 6.90570 6.15945 6.41742 6.79372 7.89771 7.49430 21 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.46418 5.77857 0.99897 0.61958 0.77255 0.48576 0.95510 16 3.02484 5.44213 2.89477 2.32250 3.39564 3.81372 4.00496 4.21077 2.03858 1.96803 4.49273 2.84378 4.20624 2.74692 2.45113 3.00601 2.79423 2.57488 5.89754 4.51024 22 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00728 5.32167 6.04402 0.61958 0.77255 1.66528 0.20966 17 2.46970 5.51515 2.80507 2.46169 4.85265 3.79890 3.98692 3.37548 2.72460 3.17979 4.55784 2.76877 2.42371 2.70560 2.29948 1.74617 3.25377 3.90173 5.95237 4.54602 23 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00728 5.32167 6.04402 0.61958 0.77255 0.12589 2.13461 18 5.88188 0.02191 6.95631 7.03096 7.27086 5.82356 7.49876 7.29484 7.10818 6.71511 7.93428 7.01467 6.53291 7.38024 6.90570 6.15945 6.41742 6.79372 7.89771 7.49430 24 - E 2.68626 4.42233 2.77528 2.73132 3.46362 2.40498 3.72503 3.29362 2.67749 2.69363 4.24698 2.90316 2.73748 3.18155 2.89773 2.37870 2.77528 2.98527 4.58485 3.61512 0.10597 2.31214 6.50092 0.12293 2.15696 0.48576 0.95510 19 2.59929 5.76823 3.18730 2.97336 5.10644 3.09155 4.23809 4.58758 2.58550 3.54248 4.81070 3.18421 4.44364 2.56282 2.21116 1.70335 1.88033 3.40713 6.20504 3.44208 26 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00461 5.77857 6.50092 0.61958 0.77255 0.48576 0.95510 20 2.99345 5.66115 3.58358 2.52348 4.95607 4.07511 3.49727 3.27445 2.04849 2.31243 3.58663 3.56534 2.50726 2.98648 2.18520 2.40646 2.82162 2.85680 6.12507 4.74660 27 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00461 5.77857 6.50092 0.61958 0.77255 0.48576 0.95510 21 5.88188 0.02191 6.95631 7.03096 7.27086 5.82356 7.49876 7.29484 7.10818 6.71511 7.93428 7.01467 6.53291 7.38024 6.90570 6.15945 6.41742 6.79372 7.89771 7.49430 28 - B 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00461 5.77857 6.50092 0.61958 0.77255 0.48576 0.95510 22 2.91437 5.78457 2.51281 1.94247 3.74676 4.04681 2.82056 4.61615 2.96842 2.88792 4.82515 2.41835 2.41681 2.36596 2.93187 2.49893 2.82159 4.17538 6.21706 4.80591 29 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00461 5.77857 6.50092 0.61958 0.77255 0.48576 0.95510 23 3.27331 5.78117 3.17161 2.32307 5.12506 2.70025 2.88493 4.61020 2.25523 3.53445 3.44887 2.70925 1.70465 3.33140 3.02022 2.47426 3.08051 3.19261 6.21455 4.80431 30 - T 2.68647 4.42254 2.77507 2.73063 3.46383 2.40511 3.72301 3.29383 2.67770 2.69384 4.24335 2.90376 2.73769 3.18175 2.89786 2.37890 2.77549 2.98503 4.58506 3.61532 0.20007 1.71579 6.50092 0.60936 0.78460 0.48576 0.95510 24 3.33663 5.51578 2.58875 3.17067 3.83642 0.81805 3.61354 4.16256 3.18965 3.12658 4.59183 2.97664 4.55332 3.53145 3.65286 3.37441 3.18801 3.84587 6.00081 3.62139 33 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00461 5.77857 6.50092 0.61958 0.77255 0.48576 0.95510 25 3.29239 5.47410 3.70479 2.39633 2.89711 4.12807 3.68583 3.46876 2.70510 1.90051 4.54635 3.66393 4.51756 1.86318 3.59945 2.58365 1.83551 3.80290 5.98040 4.64973 34 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.10699 5.77857 2.31897 0.61958 0.77255 0.48576 0.95510 26 3.22812 5.45649 3.61194 2.11219 2.68964 2.64029 3.64264 4.12398 2.46524 3.71829 4.52483 3.57711 4.44348 3.39908 2.60278 2.59208 3.45936 1.92525 5.95317 2.25873 35 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00510 5.67668 6.39903 0.61958 0.77255 0.51036 0.91698 27 2.40945 5.07221 4.09223 1.87616 3.42099 4.25410 3.43725 3.58368 2.88800 1.70352 2.79414 3.95498 3.33125 3.32403 3.86388 3.49185 3.52835 1.96044 5.64656 4.40186 36 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00480 5.73655 6.45889 0.61958 0.77255 0.36691 1.18048 28 3.02000 4.91150 4.53573 2.83243 4.02606 4.39775 4.67928 2.22325 2.16687 2.40138 3.36507 4.26772 4.77141 4.13954 4.14443 2.21547 2.13696 1.77926 5.51284 3.42066 37 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00461 5.77857 6.50092 0.61958 0.77255 0.48576 0.95510 29 2.40370 5.76469 3.53085 2.47176 3.44990 4.05109 3.61239 3.05961 2.20057 4.06638 4.80756 3.05591 4.44436 2.15379 2.15904 2.04325 2.73556 3.25394 6.20243 4.79661 38 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.03686 5.77857 3.40844 0.61958 0.77255 0.48576 0.95510 30 2.66715 5.76474 2.15030 2.40288 3.06296 4.02765 3.61371 4.59587 2.65670 3.14903 4.80540 2.29761 1.90894 2.80230 2.88393 2.58216 3.48512 4.15541 6.19739 4.78640 39 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00476 5.74647 6.46882 0.61958 0.77255 0.38897 1.13245 31 5.88188 0.02191 6.95631 7.03096 7.27086 5.82356 7.49876 7.29484 7.10818 6.71511 7.93428 7.01467 6.53291 7.38024 6.90570 6.15945 6.41742 6.79372 7.89771 7.49430 40 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00461 5.77857 6.50092 0.61958 0.77255 0.48576 0.95510 32 2.89481 5.78408 2.46265 2.96645 5.12912 3.13954 4.23437 4.61506 2.26432 4.08936 4.82480 2.68039 2.70086 2.72744 3.06713 2.61518 1.44181 3.34753 6.21682 4.80588 41 - B 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00461 5.77857 6.50092 0.61958 0.77255 0.48576 0.95510 33 2.35579 5.77747 2.89872 2.12382 5.11975 3.06214 3.64484 3.64397 2.40026 3.02041 3.47362 3.51680 2.91737 2.55101 2.34667 2.33475 3.11287 3.67002 3.94009 4.80257 42 - T 2.68622 4.42230 2.77524 2.73128 3.46358 2.40517 3.72499 3.29359 2.67745 2.69359 4.24694 2.90351 2.73672 3.18151 2.89805 2.37891 2.77524 2.98523 4.58481 3.61508 0.10072 2.89670 3.20375 0.19350 1.73769 0.48576 0.95510 34 2.82910 5.74057 2.94760 2.70266 4.01212 2.74788 3.38681 3.56113 2.05217 3.51305 4.78344 2.33869 4.42027 2.94414 3.44433 2.88822 1.51837 4.12667 4.21178 4.77250 44 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00479 5.73868 6.46103 0.61958 0.77255 0.37142 1.17039 35 2.71160 5.78504 2.79427 2.52765 5.13045 3.20897 2.83295 4.61665 2.96876 4.09045 3.91374 3.51444 4.44066 1.63641 1.95120 2.04763 2.92843 4.17587 6.21751 4.80636 45 - B 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02529 5.77857 3.82209 0.61958 0.77255 0.48576 0.95510 36 3.76488 6.35970 1.26068 2.84365 5.67979 3.13596 4.64379 5.19564 2.42702 4.65557 5.43061 1.17143 3.25055 3.76984 4.06575 3.04470 4.02118 4.74130 6.78693 5.31366 46 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00470 5.75798 6.48033 0.61958 0.77255 0.41850 1.07305 37 1.78327 5.55927 5.34309 4.96023 5.97598 4.34909 5.74081 5.38268 4.42188 5.03551 5.84912 4.88672 5.13122 5.00574 2.08236 3.82640 0.52227 4.72740 7.20534 6.09157 47 - - 2.68584 4.42231 2.77526 2.73129 3.46360 2.40519 3.72500 3.29360 2.67747 2.69361 4.24696 2.90353 2.73693 3.18152 2.89807 2.37893 2.77526 2.98524 4.58483 3.61509 0.07577 2.63851 6.50092 0.15951 1.91432 0.48576 0.95510 38 3.28498 5.74238 2.65186 2.14223 5.06540 4.06338 4.25527 3.22480 2.18015 4.03801 4.78922 3.23019 4.45819 2.37650 3.48857 3.25732 2.94043 1.27741 6.18816 4.79050 49 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00461 5.77857 6.50092 0.61958 0.77255 0.48576 0.95510 39 5.88188 0.02191 6.95631 7.03096 7.27086 5.82356 7.49876 7.29484 7.10818 6.71511 7.93428 7.01467 6.53291 7.38024 6.90570 6.15945 6.41742 6.79372 7.89771 7.49430 50 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00310 5.77707 * 0.61958 0.77255 0.00000 * //