HMMER3/b [3.0 | March 2010] NAME Ldl_recept_a ACC PF00057.13 DESC Low-density lipoprotein receptor domain class A LENG 37 ALPH amino RF no CS yes MAP yes DATE Sun Oct 7 15:43:57 2012 NSEQ 53 EFFN 4.622620 CKSUM 167548636 GA 24.10 24.10; TC 24.10 24.10; NC 24.00 24.00; BM hmmbuild HMM.ann SEED.ann SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq STATS LOCAL MSV -7.9183 0.71959 STATS LOCAL VITERBI -8.5925 0.71959 STATS LOCAL FORWARD -4.0488 0.71959 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 2.91433 1.95269 2.23111 2.49482 3.54519 2.86249 3.65110 3.41248 2.77221 3.24164 4.28880 2.99594 3.49239 3.00780 3.02821 2.64783 3.12389 3.39255 4.62149 4.06172 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00760 5.27977 6.00211 0.61958 0.77255 0.00000 * 1 2.59455 5.48458 2.87558 2.63885 4.81808 2.65217 3.96842 4.29593 2.31900 3.35624 4.52840 2.92985 2.16186 3.06860 2.84630 2.03088 2.65111 2.99993 5.92436 4.52053 1 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00760 5.27977 6.00211 0.61958 0.77255 0.48576 0.95510 2 2.70734 5.50864 2.97006 2.35481 4.85236 2.80785 3.96263 4.33737 2.10675 3.60838 4.54966 2.71933 3.41934 2.56065 2.65719 2.85793 1.90165 2.85862 5.94212 4.53199 2 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00760 5.27977 6.00211 0.61958 0.77255 0.48576 0.95510 3 3.77400 0.21139 5.84035 5.85330 6.15407 2.41810 6.37396 5.74932 5.78654 5.44668 6.32223 5.32209 5.20193 5.95014 5.71702 4.00448 4.35942 4.97708 7.23303 6.43698 3 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00760 5.27977 6.00211 0.61958 0.77255 0.48576 0.95510 4 2.57084 5.50756 2.78630 2.02339 4.85084 2.16942 3.96282 3.34202 1.99648 3.59627 3.56966 3.10185 3.95526 2.65794 2.70817 2.47997 3.23232 3.89724 5.94131 4.53145 4 - S 2.68572 4.42255 2.77468 2.73153 3.46301 2.40513 3.72524 3.29384 2.67770 2.69384 4.24719 2.90329 2.73667 3.18114 2.89830 2.37916 2.77509 2.98548 4.58506 3.61533 0.24246 1.73593 3.24252 1.09638 0.40659 0.48576 0.95510 5 2.21089 5.31789 3.16991 2.55564 4.59512 3.52086 3.98907 3.64540 2.75792 3.13052 3.31665 2.69019 1.88980 3.02875 2.77624 2.25316 3.21944 3.02628 5.79350 4.42767 10 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00789 5.24249 5.96484 0.61958 0.77255 0.47154 0.97828 6 2.28894 5.48259 2.07648 2.69873 4.45230 2.49527 2.94544 4.00931 2.60361 3.05365 4.52596 2.05911 3.27186 3.06176 2.98543 2.76597 3.10814 3.86775 5.92143 4.51668 11 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00768 5.26831 5.99066 0.61958 0.77255 0.46059 0.99672 7 3.00126 5.50661 2.65511 1.63552 3.48223 2.85570 3.22279 4.33384 2.44939 3.81093 4.10206 3.24411 4.16924 2.05503 2.89917 2.89190 2.53386 3.54051 5.94062 4.53102 12 - C 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00760 5.27977 6.00211 0.61958 0.77255 0.48576 0.95510 8 4.47182 5.66040 5.78333 5.47639 0.41065 5.30802 3.65265 3.33559 4.10866 3.66050 4.81874 5.05353 5.60781 5.13858 5.18161 4.66500 4.68662 4.07972 2.81013 2.51787 13 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00760 5.27977 6.00211 0.61958 0.77255 0.48576 0.95510 9 2.88093 5.50719 2.99834 2.63745 4.85019 3.77644 3.14451 4.33447 2.34383 3.81145 4.54846 3.06414 3.66348 1.92480 1.67032 2.55847 2.93415 3.52277 5.94098 3.39072 14 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00760 5.27977 6.00211 0.61958 0.77255 0.48576 0.95510 10 4.96125 0.05127 6.29748 6.34407 6.43546 5.11900 6.80624 6.17352 6.34171 5.79515 6.98695 6.21897 5.85238 6.62070 6.19333 5.22739 5.50585 5.73487 7.27104 6.66715 15 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00760 5.27977 6.00211 0.61958 0.77255 0.48576 0.95510 11 2.07934 5.51238 2.64714 2.51503 4.85770 2.32855 3.38953 4.34385 2.14642 3.40457 4.55298 2.78204 3.26036 2.88240 2.65046 2.61391 2.61768 3.90315 5.94490 4.53378 16 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00760 5.27977 6.00211 0.61958 0.77255 0.48576 0.95510 12 2.85685 5.51681 2.55503 2.36219 4.85842 2.84740 3.41338 4.34279 2.71113 3.40407 4.55891 1.83082 4.17697 2.95686 3.20447 1.99038 2.23922 3.90570 5.95131 4.54101 17 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00760 5.27977 6.00211 0.61958 0.77255 0.48576 0.95510 13 3.01254 5.47547 3.27148 2.41839 4.80208 1.49105 3.01992 4.27420 2.63202 3.77215 4.52183 3.00264 4.18429 3.08305 2.63392 2.12312 2.94831 3.85635 5.91869 3.23590 18 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00760 5.27977 6.00211 0.61958 0.77255 0.48576 0.95510 14 2.65549 5.50093 3.25548 2.07093 4.84128 3.37103 3.53481 3.99308 2.29392 3.48899 4.54288 3.24690 4.17087 2.15826 1.84401 2.58476 2.58403 3.30345 5.93632 4.52856 19 - E 2.68648 4.42255 2.77550 2.73099 3.46384 2.40543 3.72394 3.29366 2.67771 2.69349 4.24646 2.90351 2.73770 3.18141 2.89784 2.37843 2.77535 2.98486 4.58198 3.61533 0.30525 1.34482 6.00211 0.76963 0.62210 0.48576 0.95510 15 4.96125 0.05127 6.29748 6.34407 6.43546 5.11900 6.80624 6.17352 6.34171 5.79515 6.98695 6.21897 5.85238 6.62070 6.19333 5.22739 5.50585 5.73487 7.27104 6.66715 25 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00760 5.27977 6.00211 0.61958 0.77255 0.48576 0.95510 16 4.16270 5.32353 6.30507 5.84631 4.41084 5.85950 6.60418 0.55176 5.81010 1.80018 4.11322 6.03453 5.97635 5.95043 5.92752 5.32416 4.41425 1.79764 6.68746 5.56844 26 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00760 5.27977 6.00211 0.61958 0.77255 0.48576 0.95510 17 2.15893 5.51353 2.57387 2.70217 4.85407 3.78130 2.80947 4.33733 2.45751 3.81715 4.55648 2.67694 1.88805 2.97026 3.20585 2.13620 2.96335 3.90196 5.94929 4.54003 27 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00760 5.27977 6.00211 0.61958 0.77255 0.48576 0.95510 18 2.87389 5.45803 2.94876 2.36209 4.78061 3.23908 3.97460 3.01525 2.26740 2.72357 2.62588 2.59983 3.05764 2.68307 2.66403 2.52124 3.23367 3.51469 5.90441 3.72716 28 - G 2.68621 4.42228 2.77522 2.73126 3.46357 2.40515 3.72497 3.29357 2.67743 2.69358 4.24692 2.90349 2.73742 3.18149 2.89803 2.37858 2.77522 2.98521 4.58480 3.61506 0.06265 2.84296 6.00211 0.26155 1.46905 0.48576 0.95510 19 2.53174 5.44106 2.68704 2.72532 4.34498 3.78853 3.08031 4.22269 2.38491 2.22417 4.12457 3.17525 4.18126 2.48990 2.77693 1.87120 3.00310 3.81588 5.89167 3.23541 30 - G 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00760 5.27977 6.00211 0.61958 0.77255 0.48576 0.95510 20 3.08979 4.78991 3.99728 3.42196 3.05097 4.06804 4.28641 3.28638 2.47369 1.97929 3.89285 3.81119 4.44400 2.09399 3.20816 3.31945 3.31926 3.06566 1.67537 3.40955 31 - G 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00760 5.27977 6.00211 0.61958 0.77255 0.48576 0.95510 21 2.58530 5.01994 3.56627 2.51430 3.62331 3.90124 3.83950 3.44356 2.64715 2.55974 4.10592 3.49455 4.28758 2.81345 2.06122 3.01559 3.02339 1.75603 5.55940 3.26511 32 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00760 5.27977 6.00211 0.61958 0.77255 0.48576 0.95510 22 4.15444 0.13706 5.85922 5.69630 5.85436 4.65598 6.17219 5.48387 5.11716 5.15012 6.18703 5.47587 5.42225 5.70192 3.50272 4.38902 4.68757 5.00237 6.99375 6.03273 33 - T 2.68628 4.42236 2.77530 2.73134 3.46364 2.40484 3.72505 3.29364 2.67700 2.69365 4.24700 2.90357 2.73750 3.18157 2.89811 2.37897 2.77530 2.98458 4.58487 3.61514 0.07550 2.65573 6.00211 0.97577 0.47305 0.48576 0.95510 23 4.08140 6.88547 0.46033 2.92136 6.07101 4.08639 3.75671 5.77241 4.01284 5.18719 6.12936 1.91005 4.80104 3.97665 4.76387 3.88253 4.41346 5.27225 7.28539 5.62065 37 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00760 5.27977 6.00211 0.61958 0.77255 0.48576 0.95510 24 2.89276 5.50325 3.15771 2.64945 4.83044 1.19115 4.00107 4.30187 2.23937 3.07331 4.55129 2.64605 4.20524 2.90092 3.02920 2.82359 3.27248 3.88480 5.94463 4.54719 38 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00760 5.27977 6.00211 0.61958 0.77255 0.48576 0.95510 25 2.85237 5.44149 2.22740 1.98284 3.78941 3.39442 2.95668 3.05704 2.45948 3.45312 4.13907 3.26800 4.18112 2.77905 3.09298 2.53717 2.59969 3.11425 5.89199 3.15039 39 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00760 5.27977 6.00211 0.61958 0.77255 0.48576 0.95510 26 2.67056 5.44048 2.20039 2.66862 3.36733 3.78859 3.48828 4.22174 2.72630 3.52333 4.48900 2.22955 2.37141 2.89587 2.67587 2.76272 2.56583 3.25764 4.92758 3.60862 40 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00760 5.27977 6.00211 0.61958 0.77255 0.48576 0.95510 27 4.13598 6.95545 0.37378 2.45552 6.24210 2.63325 4.83182 5.88370 4.11465 5.29398 6.25821 3.54793 4.83077 4.03157 4.91429 3.92838 4.48019 5.36661 7.42910 5.75134 41 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00760 5.27977 6.00211 0.61958 0.77255 0.48576 0.95510 28 4.96125 0.05127 6.29748 6.34407 6.43546 5.11900 6.80624 6.17352 6.34171 5.79515 6.98695 6.21897 5.85238 6.62070 6.19333 5.22739 5.50585 5.73487 7.27104 6.66715 42 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00760 5.27977 6.00211 0.61958 0.77255 0.48576 0.95510 29 2.13006 5.47353 2.50128 2.29369 4.13874 2.82269 2.81546 3.13086 2.33860 3.59449 2.95794 3.25592 3.68985 2.81284 2.67009 2.82874 3.23321 3.37167 5.91600 4.51500 43 - S 2.68593 4.42250 2.77472 2.73130 3.46378 2.40537 3.72519 3.29379 2.67717 2.69379 4.24714 2.90281 2.73740 3.18171 2.89825 2.37875 2.77544 2.98543 4.58501 3.61434 0.18010 1.81808 6.00211 1.00145 0.45783 0.48576 0.95510 30 3.29674 5.79189 0.83905 2.79504 5.09874 3.89294 3.72344 4.58487 3.04538 2.90224 4.86092 2.37060 4.37651 3.02670 3.56413 3.00351 3.28047 4.16672 6.23801 4.80703 49 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00760 5.27977 6.00211 0.61958 0.77255 0.48576 0.95510 31 2.62712 5.10458 3.49193 2.93264 3.45221 1.35350 3.13060 3.71347 2.68202 3.23570 3.93815 3.18212 4.26177 2.50932 3.19078 3.08364 3.24698 3.13831 3.56253 4.00947 50 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00760 5.27977 6.00211 0.61958 0.77255 0.48576 0.95510 32 2.91118 5.34637 3.41123 2.32552 4.74202 3.88699 4.28340 4.17998 3.11408 3.77856 4.59461 3.51794 4.37771 3.44447 3.57376 0.76243 3.14420 3.81572 6.00219 3.26823 51 - G 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00760 5.27977 6.00211 0.61958 0.77255 0.48576 0.95510 33 4.26130 6.83940 0.30701 3.14148 5.82902 4.24453 2.59271 5.89371 4.21319 5.29139 6.28127 3.74037 4.96101 4.19324 4.91104 4.08136 4.60485 5.41177 7.09686 5.51868 52 - G 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00760 5.27977 6.00211 0.61958 0.77255 0.48576 0.95510 34 3.81995 6.32235 2.79581 0.42200 5.54542 4.08447 4.63664 5.04177 3.64779 2.78525 5.48478 3.56044 4.71194 3.81432 4.21625 3.71174 4.11237 4.66460 6.77279 5.28144 53 - G 2.68615 4.42265 2.77542 2.73117 3.46394 2.40543 3.72469 3.29338 2.67738 2.69339 4.24729 2.90333 2.73650 3.18174 2.89840 2.37870 2.77519 2.98558 4.58302 3.61543 0.44634 1.12349 3.35554 0.80996 0.58856 0.48576 0.95510 35 2.46736 5.47075 2.84423 2.06562 4.80508 3.76371 3.95191 3.08158 1.98245 3.09307 4.51424 3.03262 3.00198 2.39262 3.01468 2.63100 3.21707 2.63999 5.90991 4.50553 58 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00785 5.24681 5.96916 0.61958 0.77255 0.42048 1.06925 36 3.00131 5.50079 1.95621 2.44958 4.84116 2.96908 3.29410 4.32383 2.70087 3.80407 3.70540 2.10588 4.17017 2.90676 2.60281 2.29745 2.68217 3.51232 4.28007 4.11340 59 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00760 5.27977 6.00211 0.61958 0.77255 0.48576 0.95510 37 4.96125 0.05127 6.29748 6.34407 6.43546 5.11900 6.80624 6.17352 6.34171 5.79515 6.98695 6.21897 5.85238 6.62070 6.19333 5.22739 5.50585 5.73487 7.27104 6.66715 60 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00512 5.27729 * 0.61958 0.77255 0.00000 * //