# STOCKHOLM 1.0 #=GF ID CSD #=GF AC PF00313.17 #=GF DE 'Cold-shock' DNA-binding domain #=GF AU Finn RD #=GF SE Prosite #=GF GA 20.80 20.80; #=GF TC 20.80 20.80; #=GF NC 20.70 20.70; #=GF BM hmmbuild HMM.ann SEED.ann #=GF SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq #=GF TP Domain #=GF WK Cold-shock_domain #=GF RN [1] #=GF RM 8197194 #=GF RT Crystal structure of CspA, the major cold shock protein of #=GF RT Escherichia coli. #=GF RA Schindelin H, Jiang W, Inouye M, Heinemann U; #=GF RL Proc Natl Acad Sci U S A 1994;91:5119-5123. #=GF DR INTERPRO; IPR002059; #=GF DR PROSITE; PDOC00304; #=GF DR SCOP; 1mjc; sf; #=GF DR PRINTS; PR00050; #=GF DR HOMSTRAD; csp; #=GF SQ 40 #=GS CSPC_BACCR/1-65 AC P62171.1 #=GS CSPB_BACCE/1-65 AC Q45097.1 #=GS CSPA_BACCE/3-67 AC Q45096.1 #=GS O33591_STAAU/2-66 AC O33591.1 #=GS CSPA_LISMO/2-66 AC P0A355.1 #=GS CSP2_LACPL/2-66 AC P96349.1 #=GS O32772_9LACT/2-66 AC O32772.1 #=GS Q57NH4_SALCH/4-69 AC Q57NH4.1 #=GS O34279_YERPE/5-70 AC O34279.1 #=GS CSPB_ECOLI/5-70 AC P36995.1 #=GS CSPG_SHIFL/5-70 AC P0A981.1 #=GS CSPA_MICLC/2-67 AC O30875.1 #=GS CSPA_MYCTU/2-67 AC P63848.1 #=GS CSP_ARTGO/2-67 AC P54584.1 #=GS CAPB_PSESM/5-69 AC P0A105.1 #=GS CSPA_PSEAE/5-69 AC P95459.1 #=GS CSPD_HAEIN/2-67 AC P46449.1 #=GS CSPD_SHIFL/2-67 AC P0A971.1 #=GS CSPA_STIAD/2-67 AC P72366.1 #=GS CSP7_STRCL/2-66 AC Q01761.1 #=GS CSPF_STRCO/2-67 AC P48859.1 #=GS CSDE1_HUMAN/186-248 AC O75534.2 #=GS CSDE1_HUMAN/186-248 DR PDB; 2YTX A; 19-81; #=GS CSDE1_RAT/519-582 AC P18395.1 #=GS CSDE1_RAT/26-90 AC P18395.1 #=GS CSDE1_RAT/674-738 AC P18395.1 #=GS O53883_MYCTU/2-61 AC O53883.1 #=GS CSPF_ECOLI/5-70 AC P0A976.1 #=GS CSPH_SHIFL/5-70 AC P0A985.1 #=GS O65639_ARATH/11-77 AC O65639.1 #=GS Q41188_ARATH/11-77 AC Q41188.1 #=GS GRP2_NICSY/9-75 AC P27484.1 #=GS LIN28_CAERE/49-116 AC P91599.1 #=GS Q23960_DUGJA/29-98 AC Q23960.1 #=GS P91398_CAEEL/64-134 AC P91398.1 #=GS O62213_CAEEL/21-90 AC O62213.1 #=GS YB3_XENLA/37-106 AC Q00436.1 #=GS O46173_DROME/63-131 AC O46173.1 #=GS Q27277_SCHMA/26-95 AC Q27277.1 #=GS CSP_AQUAE/3-68 AC O67327.1 #=GS CSP_THEMA/1-65 AC O54310.1 #=GS CSP_THEMA/1-65 DR PDB; 1G6P A; 1-65; CSPC_BACCR/1-65 MQGRVKWFNAEKGFGFIEREDGD..DVFVHFSAIQQDG.....YKSLEEGQQVEFDIVD..GARGPQAANVVKL CSPB_BACCE/1-65 MNGKVKWFNNEKGFGFIEMEGSE..DVFVHFSAIQSDG.....YKALEEGQEVSFDITE..GNRGPQAANVAKL CSPA_BACCE/3-67 VTGQVKWFNNEKGFGFIEVPGEN..DVFVHFSAIETDG.....FKSLEEGQKVSFEIED..GNRGPQAKNVIKL O33591_STAAU/2-66 NNGTVKWFNAEKGFGFIEQENGG..DVFVHFSGIASDG.....YKTLEEGQKVTFEITE..GQRGDQAVNVQTV CSPA_LISMO/2-66 EQGTVKWFNAEKGFGFIERENGD..DVFVHFSAIQGDG.....FKSLDEGQAVTFDVEE..GQRGPQAANVQKA CSP2_LACPL/2-66 KNGTVKWFNADKGFGFITGEDGT..DVFVHFSAIQTDG.....FKTLDEGQKVTYDEEQ..GDRGPQATNVQPQ O32772_9LACT/2-66 TKGTVKWFNPDKGFGFITSEDGQ..DVFAHFSQIQTSG.....FKTLDEGQKVTFDVEA..GQRGPQAVNIEKA Q57NH4_SALCH/4-69 IKGQVKWFNESKGFGFITPADGSK.DVFVHFSAIQGNG.....FKTLAEGQNVEFEIQD..GQKGPAAVNVTAI O34279_YERPE/5-70 MTGLVKWFDAGKGFGFITPADGSK.DVFVHFSAIQSND.....FKTLDEGQNVEFSIEN..GAKGPAAVNVIAL CSPB_ECOLI/5-70 MTGLVKWFNADKGFGFISPVDGSK.DVFVHFSAIQNDN.....YRTLFEGQKVTFSIES..GAKGPAAANVIIT CSPG_SHIFL/5-70 MTGLVKWFNADKGFGFITPDDGSK.DVFVHFTAIQSNE.....FRTLNENQKVEFSIEQ..GQRGPAAANVVTL CSPA_MICLC/2-67 AVGTVKWFNAEKGYGFIAPEDNSA.DVFVHFSAIQGNG.....FKELQENDRVEFETQD..GPKGLQAANVTKL CSPA_MYCTU/2-67 PQGTVKWFNAEKGFGFIAPEDGSA.DVFVHYTEIQGTG.....FRTLEENQKVEFEIGH..SPKGPQATGVRSL CSP_ARTGO/2-67 AQGTVKWFNAEKGFGFITPDDSDG.DVFVHYSEIQTGG.....FKTLDENARVQFEIGQ..GAKGPQATGVTLV CAPB_PSESM/5-69 QTGTVKWFNDEKGFGFITPQSGD..DLFVHFKAIQSDG.....FKSLKEGQQVSFIATR..GQKGMQAEEVQVI CSPA_PSEAE/5-69 QNGTVKWFNDAKGFGFITPESGN..DLFVHFRSIQGTG.....FKSLQEGQKVSFVVVN..GQKGLQADEVQVV CSPD_HAEIN/2-67 EIGIVKWFNNAKGFGFISAEGVDA.DIFAHYSVIEMDG.....YRSLKAGQKVQFEVLH..SDKGSHATKIIPI CSPD_SHIFL/2-67 EKGTVKWFNNAKGFGFICPEGGGE.DIFAHYSTIQMDG.....YRTLKAGQSVQFDVHQ..GPKGNHASVIVPV CSPA_STIAD/2-67 ATGTVKWFNDAKGFGFITQDGGGE.DVFCHHSAINMDG.....FRTLQEGQKVEFEVTR..GPKGLQAQNVRSI CSP7_STRCL/2-66 ATGTVKWFNAEKGFGFIAQDGGGP.DVFVHYSAINATG.....FRSLEENQVVNFDVTH..GE.GPQAENVSPA CSPF_STRCO/2-67 ASGTVKWFNSEKGFGFIAQDGGGP.DVFAHYSNINAQG.....YRELQEGQAVTFDITQ..GQKGPQAENITPA CSDE1_HUMAN/186-248 CQGVVCAMKE..AFGFIERGDVVK.EIFFHYSEFKGDL......ETLQPGDDVEFTIKD..RNGKEVATDVRLL #=GR CSDE1_HUMAN/186-248 SS EEEEE----S..SEEEEE-SSS--.-EEEETTT--S-T......TS--S--EEEEEE--..-SSS-BEEEEEE- CSDE1_RAT/519-582 LLGYVATLKD..NFGFIETANHDK.EIFFHYSEFSGDV......DSLELGDMVEYSLSK.GKGNKVSAEKVNKT CSDE1_RAT/26-90 ETGVIEKLLT..SYGFIQCSERQA.RLFFHCSQYNGNL......QDLKVGDDVEFEVSSDRRTGKPIAIKLVKI CSDE1_RAT/674-738 RRATVECVKD..QFGFINYEVGDSKKLFFHVKEVQDGI.......ELQAGDEVEFSVILNQRTGKCSACNVWRV O53883_MYCTU/2-61 PTGKVKWYDPDKGFGFLSQEGGE..DVYVRSSALPTGV......EALKAGQRVEFGIAS..GRRGPQA....LS CSPF_ECOLI/5-70 MTGIVKTFDGKSGKGLITPSDGRI.DVQLHVSALNLRD.....AEEITTGLRVEFCRIN..GLRGPSAANVYLS CSPH_SHIFL/5-70 MTGIVKTFDRKSGKGFIIPSDGRK.EVQVHISAFTPRD.....AEVLIPGLRVEFCRVN..GLRGPTAANVYLS O65639_ARATH/11-77 STGKVNWFNASKGYGFITPDDGSV.ELFVHQSSIVSEG.....YRSLTVGDAVEFAITQ.GSDGKTKAVNVTAP Q41188_ARATH/11-77 RKGSVKWFDTQKGFGFITPDDGGD.DLFVHQSSIRSEG.....FRSLAAEEAVEFEVEI.DNNNRPKAIDVSGP GRP2_NICSY/9-75 AKGTVKWFSDQKGFGFITPDDGGE.DLFVHQSGIRSEG.....FRSLAEGETVEFEVES.GGDGRTKAVDVTGP LIN28_CAERE/49-116 YYGSCKWFNVSKGYGFVIDDITRE.DLFVHQSNLNMQG.....FRSLDEGERVSYYIQERSNGKGREAYAVSGE Q23960_DUGJA/29-98 ITGKVKWFNVKRGYGFVCRNDNQE.DIFIHQSAIVKSNPD.HPRKSVGEGEEILFDIVK..GAKGNEAANVSAI P91398_CAEEL/64-134 LQGKVKWYSVLRRYGFISRSDGEK.DVFVHQTAISKSDTEKFYLRTLADEEEVLFDLVD..GKNGPEAANVTGP O62213_CAEEL/21-90 VKGTVKWFNVKNGYGFINRTDTNE.DIFVHQTAIINNNPN.KYLRSLGDNEEVMFDIVE..GSKGLEAASVTGP YB3_XENLA/37-106 VLGTVKWFNVRNGYGFINRNDTKE.DVFVHQTAIKKNNPR.KYLRSVGDGETVEFDVVE..GEKGAEAANVTGP O46173_DROME/63-131 VTGTVKWFNVKSGYGFINRNDTRE.DVFVHQSAIANNPK..KAVRSVGDGEVVEFDVVI..GEKGNEAANVTGP Q27277_SCHMA/26-95 VKGVVKWFNVKAGYGFINRQDTST.DIFVHQSAISRNNPE.KLQRSLQEGEEVEFYVVE..GDKGDEASEVTGP CSP_AQUAE/3-68 FRGTVKWFSKDKGYGFITREDTNA.DVFVHFTDIQMEG.....FKTLQKGQKVEFDVVE..DTKGPRAKNVRVL CSP_THEMA/1-65 MRGKVKWFDSKKGYGFITKDEGG..DVFVHWSAIEMEG.....FKTLKEGQVVEFEIQE..GKKGPQAAHVKVV #=GR CSP_THEMA/1-65 SS --EEEEEEETTTTEEEEEETTS-..B-BB-SSSS--SS.....-----SSSEEEEEEE-..SSS--EEEEEEEE #=GC SS_cons EEEEEEEEETTTTEEEEEETTS-..BEEEETTTS-SST.....-TS--SSSEEEEEEE-..SSSS-EEEEEEEE #=GC seq_cons hpGsVKWFNscKGFGFIs.--Gst.DVFVHaSuIpssG.....a+oLpEGpcVpF-lpp..Gs+GspAsNVpsh //