HMMER3/b [3.0 | March 2010] NAME MerR ACC PF00376.18 DESC MerR family regulatory protein LENG 38 ALPH amino RF no CS yes MAP yes DATE Tue Oct 9 23:36:06 2012 NSEQ 347 EFFN 63.047829 CKSUM 862412037 GA 28.20 28.20; TC 28.20 28.20; NC 28.10 28.10; BM hmmbuild HMM.ann SEED.ann SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq STATS LOCAL MSV -7.4900 0.71955 STATS LOCAL VITERBI -7.4096 0.71955 STATS LOCAL FORWARD -4.3910 0.71955 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 2.76107 5.45451 3.34046 2.69463 3.70581 2.53789 3.99239 2.66725 2.89731 2.40554 4.42221 3.49908 3.11662 3.41205 2.22650 2.68044 2.68931 2.84753 5.04892 2.74377 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00065 7.73977 8.46212 0.61958 0.77255 0.00000 * 1 4.40539 7.33464 3.71053 4.51385 5.32010 4.31424 4.92356 6.16735 2.07149 4.10018 6.37505 2.64194 3.52180 3.67307 2.31259 1.63128 1.06337 4.86383 7.76674 5.19909 1 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00065 7.73977 8.46212 0.61958 0.77255 0.48576 0.95510 2 4.05565 6.65138 7.31807 6.72409 5.81218 6.53728 6.92228 0.37836 6.52476 3.50376 3.18419 6.71323 3.35947 6.66670 6.54231 3.39474 2.65818 2.64174 7.40028 6.21882 2 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00065 7.73977 8.46212 0.61958 0.77255 0.48576 0.95510 3 2.74389 7.33520 4.23768 3.58101 6.68150 0.78056 5.78193 4.55469 1.97963 4.51228 6.37554 3.02136 5.34176 3.74095 3.12557 2.17566 3.74734 4.76753 7.76715 6.35546 3 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00065 7.73977 8.46212 0.61958 0.77255 0.48576 0.95510 4 2.83249 7.33019 2.13370 0.78108 5.36742 5.59639 5.78355 4.36841 3.02891 4.96487 4.63517 5.06428 4.83086 1.96377 3.78195 4.42554 3.18444 3.16885 7.76355 6.35327 4 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00065 7.73977 8.46212 0.61958 0.77255 0.48576 0.95510 5 1.64494 4.71887 7.40057 6.80527 2.68544 6.63530 7.00671 3.01871 6.60821 1.38590 3.51839 6.80376 6.97139 6.73950 6.62273 5.96187 4.61878 0.97674 7.46391 6.29248 5 - H 2.68706 4.42538 2.77603 2.73188 3.46667 2.40826 3.72138 3.29214 2.67809 2.67622 4.25003 2.90380 2.74053 3.18459 2.89285 2.38018 2.77833 2.98831 4.58790 3.61816 0.10402 2.31684 8.46212 1.59415 0.22700 0.48576 0.95510 6 0.67997 3.59775 3.61082 4.30344 6.20187 4.31476 5.93199 4.15119 3.31595 5.23448 4.32919 5.27648 6.10999 5.10259 4.69125 1.42917 3.02285 3.75184 7.50545 6.18972 11 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00065 7.73977 8.46212 0.61958 0.77255 0.48576 0.95510 7 2.85647 7.33555 2.40280 1.40293 6.68203 4.64905 3.70599 4.98928 1.52566 3.85675 6.37585 3.92226 5.98837 2.20870 2.05811 3.61418 3.71994 5.72695 7.76740 4.79014 12 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00065 7.73977 8.46212 0.61958 0.77255 0.48576 0.95510 8 2.40792 5.57943 4.02174 2.82599 2.15743 4.84000 4.86661 2.56451 2.31170 1.38614 2.78097 4.58667 6.15369 3.20176 2.32742 4.49557 4.52747 3.56810 7.42810 4.77530 13 - H 2.68631 4.42238 2.77533 2.73136 3.46367 2.40526 3.72508 3.29367 2.67754 2.69368 4.24703 2.90360 2.73753 3.18160 2.89814 2.37900 2.77533 2.98267 4.58490 3.61516 0.02185 3.84414 8.46212 0.08530 2.50389 0.48576 0.95510 9 2.24312 3.19181 6.98139 6.36571 2.94531 4.47586 4.17785 4.06431 5.23578 1.77752 4.01267 5.20277 2.31103 5.27894 6.15611 2.05513 1.58602 2.28919 7.00930 4.25139 15 - H 2.68669 4.42276 2.77571 2.73175 3.46405 2.39993 3.72546 3.29405 2.67792 2.69406 4.24741 2.90398 2.73791 3.18198 2.89852 2.37938 2.77571 2.98570 4.58528 3.61555 0.04192 3.19801 8.46212 0.68912 0.69719 0.48576 0.95510 10 4.15042 7.39641 1.93110 3.62953 6.74173 0.54887 4.02083 6.23000 3.43376 5.70156 6.43819 2.76555 6.03615 3.58917 3.24694 3.58393 5.11077 4.76412 7.82751 6.41283 18 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00065 7.73977 8.46212 0.61958 0.77255 0.48576 0.95510 11 4.05458 4.26345 6.90154 6.32691 4.62205 5.13393 6.46177 1.55611 6.11811 1.64419 3.73502 6.30371 6.48908 6.24079 6.12058 4.81086 3.28883 0.77358 6.91539 5.80414 19 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00065 7.73977 8.46212 0.61958 0.77255 0.48576 0.95510 12 3.14939 7.33619 3.91243 4.24621 6.68261 4.23123 3.54835 6.16953 3.25981 5.03560 6.37652 3.03174 2.41591 4.29867 3.74497 1.00211 1.26708 5.72756 7.76805 6.35627 20 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00065 7.73977 8.46212 0.61958 0.77255 0.48576 0.95510 13 2.26174 7.30235 3.66537 3.40237 6.63350 5.60441 4.86090 1.85101 2.87588 3.99874 5.61697 4.47201 1.74586 3.49803 3.06774 2.48580 2.72061 1.81458 7.74346 4.34486 21 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00065 7.73977 8.46212 0.61958 0.77255 0.48576 0.95510 14 2.98756 7.33554 2.74250 2.92175 6.68202 3.85271 2.97056 5.20709 2.18836 5.64143 6.37584 4.04856 4.13162 2.83684 1.43188 1.46419 3.48498 3.70466 7.76739 4.12365 22 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00065 7.73977 8.46212 0.61958 0.77255 0.48576 0.95510 15 2.29652 6.59537 5.96340 5.39230 4.67681 4.98841 6.22966 4.29617 2.21621 3.80230 2.31268 4.01066 6.34041 3.55388 4.32281 3.50106 0.73745 3.37540 7.18706 3.74516 23 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00065 7.73977 8.46212 0.61958 0.77255 0.48576 0.95510 16 4.78278 7.60470 8.68932 8.27967 6.78483 8.34954 9.37470 1.19596 8.32130 0.62948 6.43555 8.53105 8.39513 8.49573 8.50188 7.88194 6.74012 1.90147 9.25422 8.13846 24 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00065 7.73977 8.46212 0.61958 0.77255 0.48576 0.95510 17 5.00437 6.61356 4.87362 5.51144 4.72383 6.02760 3.29492 3.56745 3.70004 3.95340 5.01647 5.84923 6.40070 3.99004 0.25169 5.29282 4.71487 3.96341 7.20379 3.97002 25 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00065 7.73977 8.46212 0.61958 0.77255 0.48576 0.95510 18 2.89174 5.03292 4.07411 4.17515 1.39113 5.70192 2.16179 4.94729 3.38633 3.38274 5.43811 3.37151 6.09115 3.66572 2.75154 3.80580 4.09643 4.47043 5.82112 1.27355 26 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00065 7.73977 8.46212 0.61958 0.77255 0.48576 0.95510 19 6.67971 5.05345 5.38340 7.88766 5.29220 7.64760 6.89234 6.04199 7.67061 1.92488 4.95852 7.49793 7.90136 7.50423 7.54810 7.01174 6.89284 4.36973 1.79104 0.44356 27 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00065 7.73977 8.46212 0.61958 0.77255 0.48576 0.95510 20 3.26433 7.31605 1.76594 0.69702 6.65340 4.64309 2.63713 3.48109 4.52611 3.53893 5.16639 4.69489 5.99379 3.44606 4.58274 3.46463 3.77573 3.76928 7.75339 6.34713 28 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00065 7.73977 8.46212 0.61958 0.77255 0.48576 0.95510 21 2.92042 7.33554 2.53641 1.72427 6.68201 5.59489 4.84431 5.13760 1.81168 3.26786 5.02183 3.78593 5.98839 2.42637 1.59753 2.34123 3.13193 5.72693 7.76739 6.35559 29 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00065 7.73977 8.46212 0.61958 0.77255 0.48576 0.95510 22 2.67200 7.32925 3.63629 1.60192 6.67276 5.00871 4.14525 1.82227 1.96570 2.47946 4.27537 4.20936 5.99008 2.50221 2.29419 3.75858 4.19041 3.64526 7.76287 4.26344 30 - T 2.68653 4.42260 2.77555 2.73158 3.45752 2.40548 3.72303 3.29389 2.67776 2.69390 4.24725 2.90382 2.73775 3.18181 2.89836 2.37922 2.77555 2.98553 4.58512 3.61176 0.06837 2.88992 4.55598 0.03555 3.35456 0.48576 0.95510 23 4.38743 7.36307 3.63645 3.37257 6.70868 0.35319 5.23968 6.19645 2.98304 5.66850 6.40429 2.66546 4.31287 4.29382 4.45315 3.91174 4.43477 5.75413 7.79462 4.14551 32 - T 2.68674 4.42281 2.77576 2.73179 3.46410 2.40569 3.72551 3.28965 2.67797 2.68905 4.24746 2.90403 2.73796 3.18203 2.89857 2.37943 2.77576 2.98464 4.58533 3.61559 0.09419 2.41152 8.45177 0.02270 3.79675 0.30853 1.32624 24 4.53040 6.42818 6.66421 4.06473 3.31740 4.27656 4.79031 3.12705 2.63344 0.38605 4.53211 6.19060 6.49959 3.48856 3.70777 4.85105 5.23201 3.90769 7.04452 4.43992 34 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00065 7.73977 8.46212 0.61958 0.77255 0.48576 0.95510 25 5.01334 6.38749 6.98166 6.36595 3.93080 3.38894 5.29121 0.92096 4.02931 1.10061 3.92586 4.88559 4.61467 5.30321 4.48239 4.15726 5.24551 2.26528 7.00931 5.83346 35 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.44429 7.73977 1.02642 0.61958 0.77255 0.48576 0.95510 26 3.01514 6.93632 3.93026 3.01923 6.28208 3.78306 3.57769 3.82499 2.43827 3.79806 5.97680 3.78615 0.80642 3.46771 2.65264 2.91449 3.48776 3.45485 7.36859 4.95407 36 - - 2.68668 4.42275 2.77167 2.73173 3.46404 2.40563 3.72545 3.29404 2.67791 2.69405 4.24740 2.90397 2.73790 3.18197 2.89851 2.37937 2.77167 2.98569 4.58527 3.61553 0.08524 2.78000 3.92877 0.68902 0.69729 0.02340 3.76652 27 2.35886 4.70073 4.00261 2.41166 3.67069 5.15857 3.64753 3.37881 2.68539 2.93326 5.21952 3.84004 1.46557 2.91334 2.89232 2.52139 2.38319 3.50371 7.74539 5.30513 39 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01147 7.72728 4.51319 0.61958 0.77255 0.91884 0.50913 28 2.12573 5.10710 3.77958 3.16810 5.51302 3.96878 4.31751 3.30361 3.71191 2.76610 5.34652 4.52221 0.98550 3.59559 3.38113 2.58826 3.49215 2.68864 7.66466 3.69011 40 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00066 7.71647 8.43882 0.61958 0.77255 0.36808 1.17786 29 2.88547 7.32564 3.10442 1.92041 5.37651 3.36963 3.71412 2.77982 3.03230 3.15254 4.64689 3.62127 2.82277 2.14658 2.23908 3.25698 2.52715 2.50588 4.84099 4.75603 41 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00065 7.73443 8.45677 0.61958 0.77255 0.37413 1.16438 30 4.34338 7.33039 2.60794 3.58649 5.62053 3.84333 4.50536 3.28830 2.56312 3.73063 4.96749 3.58241 4.62273 3.82236 0.58075 3.87080 3.40082 3.91276 7.76369 4.60806 42 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00522 7.73977 5.34604 0.61958 0.77255 0.48576 0.95510 31 3.39335 7.33092 2.35147 3.28984 5.33933 2.80849 5.07027 4.72644 3.11487 3.15645 6.37127 2.88966 2.71280 3.92692 2.86920 1.85426 1.21619 4.52217 7.76289 6.35121 43 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01287 7.73521 4.39414 0.61958 0.77255 0.38704 1.13651 32 1.78159 5.62907 2.51729 1.67261 4.74244 3.47762 3.97163 4.74582 3.15520 3.48795 4.95437 3.19445 2.27152 2.91544 3.34655 2.36375 3.59572 2.99113 6.08836 5.36227 44 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02474 7.72762 3.73006 0.61958 0.77255 0.65441 0.73345 33 2.46008 7.30586 4.56114 4.09793 6.65214 1.36999 4.55745 4.98629 3.07006 4.90468 6.34621 1.63637 4.96786 4.07857 3.78612 1.44634 2.63039 5.69715 7.73783 5.11455 45 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00067 7.70779 8.43013 0.61958 0.77255 0.60890 0.78515 34 4.36833 7.36400 4.28274 4.53624 6.71198 0.55004 5.11773 6.19717 3.59981 4.60582 6.40589 1.68967 6.01396 3.88769 2.87678 3.22352 3.57128 5.75663 7.79316 6.38405 46 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00066 7.72365 8.44600 0.61958 0.77255 0.25695 1.48459 35 3.90310 7.10330 4.53415 4.35200 4.10863 4.84558 2.33761 3.32376 3.30956 4.60104 5.40785 3.52851 5.26517 3.02519 2.01162 4.87120 3.37047 3.88810 4.83370 0.77622 47 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00375 7.73977 5.71161 0.61958 0.77255 0.48576 0.95510 36 3.95497 6.85866 5.80870 5.22258 6.02919 3.86907 6.18098 4.72112 4.27635 5.08319 5.96405 4.25802 4.87608 5.44968 0.18687 4.66557 4.71099 4.06256 4.47483 4.43608 48 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00639 7.73667 5.12744 0.61958 0.77255 0.61255 0.78082 37 3.76224 5.13747 3.34762 3.48681 3.36633 5.15796 4.32827 2.37098 3.20647 1.65310 4.39204 4.66943 6.31687 3.98830 1.63238 3.30349 3.86360 2.19372 4.36710 2.23647 49 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00065 7.73094 8.45328 0.61958 0.77255 0.32572 1.28017 38 7.69824 8.57264 8.55331 8.54131 1.57476 8.17033 6.75840 3.30843 8.30364 4.93756 7.67128 7.68882 8.40344 7.87338 8.04146 7.58280 5.17434 3.92856 4.59489 0.34435 50 - B 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00044 7.73956 * 0.61958 0.77255 0.00000 * //