HMMER3/b [3.0 | March 2010] NAME Flg_bb_rod ACC PF00460.15 DESC Flagella basal body rod protein LENG 31 ALPH amino RF no CS no MAP yes DATE Sun Oct 7 17:20:06 2012 NSEQ 16 EFFN 16.000000 CKSUM 109859715 GA 20.70 20.70; TC 20.70 20.70; NC 20.60 20.60; BM hmmbuild HMM.ann SEED.ann SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq STATS LOCAL MSV -6.7667 0.72140 STATS LOCAL VITERBI -7.2658 0.72140 STATS LOCAL FORWARD -4.1895 0.72140 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 1.87794 6.10823 3.24983 3.50972 3.67287 2.83264 4.71045 2.77945 3.23991 2.48193 3.77117 2.01259 4.42088 2.88801 3.28832 2.65835 2.58473 2.77234 6.07905 3.64497 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00246 6.40619 7.12854 0.61958 0.77255 0.00000 * 1 5.98731 7.03786 7.98154 7.38624 2.08801 7.59956 7.71733 1.58794 7.31234 0.64751 2.09260 7.82590 7.18105 6.77686 7.05550 7.12530 6.13675 4.54497 7.22697 6.45707 1 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00246 6.40619 7.12854 0.61958 0.77255 0.48576 0.95510 2 3.70231 6.19757 2.58608 2.63028 5.53614 4.47768 4.66561 5.01769 3.40245 2.29636 5.23999 2.24326 4.87130 2.49158 1.78442 2.78407 3.93346 4.58482 3.35906 1.80429 2 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00246 6.40619 7.12854 0.61958 0.77255 0.48576 0.95510 3 2.70221 5.31531 5.19435 4.61083 2.82499 4.90269 2.95346 2.13213 4.50390 3.51208 4.42930 2.64058 5.27358 3.04941 4.71121 2.93206 1.49493 1.60773 5.92414 4.72834 3 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00246 6.40619 7.12854 0.61958 0.77255 0.48576 0.95510 4 0.85797 5.96560 4.44141 3.94078 5.37703 1.94445 2.40539 4.78827 3.93797 2.54860 5.24559 4.40658 5.17292 2.76452 4.36887 2.70952 4.18027 4.44674 6.67796 5.37479 4 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00246 6.40619 7.12854 0.61958 0.77255 0.48576 0.95510 5 2.34819 5.86782 4.17082 2.43486 5.08898 2.69672 4.78399 3.04768 2.79234 2.81802 2.31147 4.12370 4.96448 2.74222 2.87101 2.64704 2.92291 1.75943 6.38270 5.06189 5 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00246 6.40619 7.12854 0.61958 0.77255 0.48576 0.95510 6 3.92003 6.38734 4.02152 2.58082 5.81643 1.94893 4.90983 5.30496 3.67153 4.78322 5.53163 2.51887 5.07121 4.01804 2.85693 0.88807 2.27583 4.84997 6.91248 5.50051 6 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00246 6.40619 7.12854 0.61958 0.77255 0.48576 0.95510 7 0.62050 6.08808 6.47907 6.38434 6.97873 1.22369 6.97620 6.48997 6.12672 6.16360 6.89247 5.76098 5.75635 6.37242 2.84597 4.38438 2.65194 5.52809 8.28240 7.27880 7 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00246 6.40619 7.12854 0.61958 0.77255 0.48576 0.95510 8 2.67129 5.60810 5.46968 4.95435 4.60149 5.17568 5.52998 3.94017 4.76930 0.62336 2.11454 2.38955 5.56222 2.90364 4.93948 4.50066 4.36372 3.82972 6.21285 5.04492 8 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00246 6.40619 7.12854 0.61958 0.77255 0.48576 0.95510 9 2.22439 6.18301 2.94691 3.40483 5.51629 4.47893 4.66740 2.48711 2.67599 4.48329 3.03486 1.65612 4.87223 2.31321 3.89761 1.76943 2.77043 4.56732 6.62289 5.21918 9 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00246 6.40619 7.12854 0.61958 0.77255 0.48576 0.95510 10 0.96197 6.20978 2.34900 3.42157 5.54600 4.49571 4.68910 5.02423 3.42792 2.88703 5.25606 2.90202 4.89301 2.14282 2.52575 3.69248 2.77761 4.59635 6.64981 5.24565 10 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00246 6.40619 7.12854 0.61958 0.77255 0.48576 0.95510 11 1.80435 6.13317 3.99035 2.22260 3.21561 4.49447 4.68521 4.90731 3.43353 2.28023 5.18302 2.79481 4.88720 1.36250 2.74287 3.68681 2.71391 4.50571 6.58636 5.19715 11 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00246 6.40619 7.12854 0.61958 0.77255 0.48576 0.95510 12 1.69964 6.22676 2.53508 3.44725 5.56954 4.51559 4.71367 5.04604 3.44824 2.84356 5.28098 3.99218 4.91649 1.24841 2.23597 2.08415 3.98401 4.61902 6.67229 5.27111 12 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00246 6.40619 7.12854 0.61958 0.77255 0.48576 0.95510 13 2.22994 6.00877 4.06418 3.50693 5.27417 4.52815 4.72603 1.92635 2.44441 3.18486 5.07141 2.73758 4.91915 2.17502 2.34029 2.70747 2.07429 2.87785 6.49228 5.13550 13 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00246 6.40619 7.12854 0.61958 0.77255 0.48576 0.95510 14 1.45399 6.43611 4.22401 2.63542 5.82088 4.70918 4.83378 5.27707 2.00610 4.72265 5.48041 2.12692 5.09520 2.11905 1.54949 3.93071 4.18778 4.85101 6.81411 5.45812 14 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00246 6.40619 7.12854 0.61958 0.77255 0.48576 0.95510 15 4.35122 5.68522 6.32490 5.72032 4.56312 5.57580 5.91583 2.53275 5.52253 0.96627 2.30329 5.73972 5.87775 1.72702 5.52152 4.90199 3.00110 1.92795 6.31200 5.18332 15 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00246 6.40619 7.12854 0.61958 0.77255 0.48576 0.95510 16 2.15213 6.85362 1.22213 1.91379 6.17586 4.77575 5.14606 5.69040 2.44640 5.15029 5.92192 1.52989 5.29246 4.27003 4.55594 2.81692 4.51683 5.23600 7.28064 5.81084 16 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00246 6.40619 7.12854 0.61958 0.77255 0.48576 0.95510 17 2.82947 6.00011 6.91766 6.43316 5.45106 6.34456 7.02439 1.44512 6.35160 4.01379 3.07186 6.52613 6.60568 6.59286 6.47621 5.75491 1.81932 0.79107 7.40452 6.17397 17 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00246 6.40619 7.12854 0.61958 0.77255 0.48576 0.95510 18 2.52964 5.43990 6.09972 5.50314 4.58868 5.33060 5.70143 1.05629 5.30385 2.15150 4.57066 5.49761 5.67811 5.44517 5.32206 4.65457 2.21647 1.70012 6.17828 2.38635 18 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00246 6.40619 7.12854 0.61958 0.77255 0.48576 0.95510 19 0.77599 6.06901 6.75464 6.78350 7.06313 2.27969 7.18140 6.59732 6.64058 6.28808 6.99164 5.84508 5.76220 6.65049 6.54028 1.12289 2.44213 5.55824 8.39710 7.43821 19 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00246 6.40619 7.12854 0.61958 0.77255 0.48576 0.95510 20 1.81461 6.87512 2.67939 4.26471 7.06279 4.99411 6.01797 6.64492 5.23675 6.15313 6.99977 0.78406 5.76012 5.22840 5.87179 1.36375 5.10324 5.92757 8.28900 6.80410 20 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00246 6.40619 7.12854 0.61958 0.77255 0.48576 0.95510 21 6.73432 7.96696 6.76704 6.85483 7.92542 6.49392 7.91446 8.34783 7.39053 7.55533 8.76497 0.01210 7.18641 7.59588 7.41804 6.92503 7.21980 7.79005 8.54530 8.01764 21 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00246 6.40619 7.12854 0.61958 0.77255 0.48576 0.95510 22 5.24197 6.36598 7.43280 7.00743 5.42206 7.07501 7.98994 0.72456 7.03115 1.19037 5.08549 7.25694 7.10556 7.14553 7.17160 6.59603 5.49417 1.71425 7.86185 6.78554 22 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00246 6.40619 7.12854 0.61958 0.77255 0.48576 0.95510 23 0.19281 6.11592 6.16204 6.22556 7.06978 4.88477 7.05856 6.61753 6.46702 6.29729 7.01382 2.80116 5.77140 6.48247 6.47870 2.59894 4.78947 5.59220 8.39744 7.38592 23 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00246 6.40619 7.12854 0.61958 0.77255 0.48576 0.95510 24 6.73432 7.96696 6.76704 6.85483 7.92542 6.49392 7.91446 8.34783 7.39053 7.55533 8.76497 0.01210 7.18641 7.59588 7.41804 6.92503 7.21980 7.79005 8.54530 8.01764 24 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00246 6.40619 7.12854 0.61958 0.77255 0.48576 0.95510 25 1.18635 5.22832 5.82728 5.21246 4.32086 5.02910 5.36475 2.39805 4.99682 2.16165 2.41871 5.19373 5.39168 5.12699 5.00330 2.26967 4.08851 1.88244 5.85540 2.87138 25 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00246 6.40619 7.12854 0.61958 0.77255 0.48576 0.95510 26 2.89921 6.94667 1.31535 3.99615 2.35308 4.94790 5.64297 6.13044 4.69791 5.64111 6.47539 0.92746 5.61074 4.82139 5.29276 2.21015 4.93088 5.62065 7.77589 6.28609 26 - - 2.68648 4.42255 2.77549 2.73153 3.46384 2.40542 3.72524 3.29384 2.67770 2.69385 4.24719 2.90376 2.73769 3.18176 2.89830 2.37594 2.77549 2.98548 4.58507 3.61533 0.19827 1.72008 7.12854 0.04149 3.20290 0.48576 0.95510 27 4.19418 6.08854 6.65694 6.67831 6.88154 2.23599 7.14368 5.96094 6.57543 5.99292 6.81605 5.86095 5.79898 6.62394 6.49968 4.42649 0.34826 1.99279 8.28346 7.27859 28 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00246 6.40619 7.12854 0.61958 0.77255 0.48576 0.95510 28 2.68228 6.16328 2.85346 2.21876 5.48520 4.49023 4.68253 4.95510 3.42845 4.45907 5.21115 2.94698 1.84037 3.78729 3.91747 2.82340 1.56393 2.15176 6.61102 3.17440 29 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00246 6.40619 7.12854 0.61958 0.77255 0.48576 0.95510 29 4.82078 6.79796 5.14020 5.11941 7.24550 0.22289 6.39311 6.84490 5.01620 6.30581 7.17473 2.49195 6.05854 5.62991 2.78113 4.93578 5.31843 6.08770 8.18888 7.08415 30 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00246 6.40619 7.12854 0.61958 0.77255 0.48576 0.95510 30 1.85195 7.05195 7.06020 6.99652 1.01337 6.45666 5.48089 5.84526 6.79781 5.07153 6.38245 6.26701 2.60602 6.48363 6.60501 5.89008 6.17398 5.72657 5.56673 0.99645 31 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00246 6.40619 7.12854 0.61958 0.77255 0.48576 0.95510 31 4.37752 6.75537 2.59583 4.02166 6.21056 5.03671 5.06886 5.61116 0.70873 5.01006 5.80879 4.50609 5.41631 1.87402 2.56813 4.33117 2.25231 5.21308 7.04701 5.77912 32 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00165 6.40539 * 0.61958 0.77255 0.00000 * //