HMMER3/b [3.0 | March 2010] NAME LRR_1 ACC PF00560.28 DESC Leucine Rich Repeat LENG 22 ALPH amino RF no CS yes MAP yes DATE Mon Oct 8 13:31:01 2012 NSEQ 2414 EFFN 2414.000000 CKSUM 2549889978 GA 20.60 9.30; TC 20.60 9.30; NC 20.50 9.20; BM hmmbuild HMM.ann SEED.ann SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq STATS LOCAL MSV -6.8376 0.75614 STATS LOCAL VITERBI -7.8329 0.75614 STATS LOCAL FORWARD -3.0741 0.75614 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 3.28691 3.69990 2.99482 2.89225 3.18162 3.02031 3.67100 2.83153 3.05679 1.73538 4.21223 2.45331 3.21245 3.30164 2.97885 2.44817 3.12296 3.04597 5.05851 3.85275 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00002 11.37210 12.09445 0.61958 0.77255 0.00000 * 1 3.05187 4.63594 3.74153 3.34603 4.05210 3.55507 2.94621 5.52133 2.03251 3.91862 4.68203 1.52504 4.42195 2.69951 2.57138 1.86787 2.80092 4.57914 5.96637 3.90567 1 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00002 11.37210 12.09445 0.61958 0.77255 0.48576 0.95510 2 4.64586 5.60294 10.15383 9.70567 4.34052 6.04604 9.81559 2.47757 9.53009 0.23156 4.42511 9.68641 5.31427 9.63389 9.53215 5.59310 4.30900 2.86353 6.02280 9.25611 2 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00002 11.37210 12.09445 0.61958 0.77255 0.48576 0.95510 3 3.89519 5.74641 4.27739 1.60269 5.18081 5.25030 3.99467 3.09005 2.11220 3.63781 4.79379 3.88417 6.20220 1.96290 1.74145 3.30119 2.29430 3.11573 6.04096 4.80577 3 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00002 11.37210 12.09445 0.61958 0.77255 0.48576 0.95510 4 3.65318 4.75120 4.04499 1.93126 3.35559 4.56717 2.48649 2.64504 2.72764 3.32484 4.94674 3.55459 9.56972 3.84357 2.51944 2.46985 2.57383 2.21274 4.80926 2.45274 4 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00002 11.37210 12.09445 0.61958 0.77255 0.48576 0.95510 5 4.99143 5.64247 12.60979 12.11895 3.28970 12.26959 12.80898 2.12204 12.11134 0.29302 3.77444 12.47143 12.06425 11.85522 12.04584 11.80958 5.70644 2.80906 12.39629 11.53953 5 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00002 11.37210 12.09445 0.61958 0.77255 0.48576 0.95510 6 4.73541 5.06439 1.12599 3.33558 3.95747 4.60541 3.61459 3.74713 3.66385 3.66843 5.06781 1.67051 6.47509 4.16256 3.01807 2.42623 3.76890 3.40774 4.50156 2.54975 6 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00002 11.37210 12.09445 0.61958 0.77255 0.48576 0.95510 7 3.57054 4.47574 10.61729 10.00164 3.03463 9.81161 10.14660 1.97181 9.78415 0.45884 3.17745 9.97938 10.17118 9.90932 9.78610 5.96571 5.85337 2.43080 5.95216 5.78881 7 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00002 11.37210 12.09445 0.61958 0.77255 0.48576 0.95510 8 2.91104 4.61503 2.89918 3.11474 4.48420 2.71876 3.91479 4.78020 3.48931 5.18667 5.74475 2.84160 5.22031 3.16413 2.03899 1.03024 2.92210 4.10288 4.95045 3.87139 8 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00018 11.37210 8.67888 0.61958 0.77255 0.48576 0.95510 9 3.95774 3.72523 2.50385 3.28995 3.22082 1.37732 2.69524 5.20250 3.59495 4.74437 5.17595 1.80054 6.46099 3.65079 2.48619 2.49843 4.28349 5.27496 4.87040 3.07964 9 - S 2.69753 4.04473 2.78654 2.74258 3.30749 2.41648 3.73629 3.30489 2.68876 2.70490 4.25824 2.91481 2.74874 3.19281 2.90935 2.39022 2.78654 2.99653 4.59612 3.62638 0.02428 3.74504 7.95956 0.69295 0.69334 0.36039 1.19536 10 4.18563 1.73471 4.45823 9.45189 6.17163 4.76091 5.89208 5.12378 6.39398 4.04378 5.12693 0.49953 8.62319 4.31696 4.63494 3.01024 2.86227 4.77626 6.47163 5.16060 12 - S 2.71096 3.88562 2.79562 2.75298 3.48742 2.45395 3.69885 3.32464 2.70656 2.74783 4.25955 2.92771 2.66649 3.20812 2.91556 2.38363 2.71510 2.93292 4.57778 3.63475 0.33960 1.24502 12.09411 0.04982 3.02418 0.28173 1.40437 11 3.70453 3.87435 3.20753 2.92791 3.38628 2.78804 3.21302 4.56191 2.54865 3.39465 4.29352 1.87219 2.69454 2.43893 2.08086 2.39074 3.70685 4.25999 5.46840 3.84856 15 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00002 11.37210 12.09445 0.61958 0.77255 0.48576 0.95510 12 8.59784 5.13003 10.57754 5.93792 2.20207 9.76962 10.10390 1.47313 9.74272 0.75141 3.53758 5.69268 10.13216 9.87002 3.21010 9.08179 5.91102 2.36287 6.02168 4.91959 16 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00037 11.37210 7.92489 0.61958 0.77255 0.48576 0.95510 13 3.64205 3.08295 3.50203 2.34269 3.92703 3.05963 4.16906 3.88354 2.63112 3.37398 4.65364 3.33959 3.60003 2.51752 3.04316 1.96269 1.71796 2.74612 10.73721 4.81404 17 - S 2.74728 4.49043 2.69653 2.78731 3.53172 2.04686 3.79313 3.34841 2.71888 2.74962 4.31508 2.97165 2.73470 3.24965 2.94897 2.43878 2.83331 3.04216 4.65295 3.66261 0.34598 1.23050 8.02401 0.00019 8.57556 0.27755 1.41732 14 3.25580 3.76692 2.26556 2.24667 3.94499 4.25598 2.97207 3.51101 2.54767 3.47612 4.73718 2.63828 3.45677 3.10890 3.26970 2.02825 2.58250 2.77206 5.92730 3.26436 19 - E 2.74419 3.72517 2.79886 2.67311 3.42235 2.47993 3.58794 3.26032 2.84724 2.75035 3.97357 2.77415 2.52833 3.17384 2.94990 2.42120 2.94747 3.04389 4.42413 3.85198 0.50190 0.92984 12.09413 2.05500 0.13707 0.91174 0.51387 15 3.97577 6.51432 4.62448 9.94727 2.48069 4.96198 6.07613 1.09594 5.90225 1.00420 3.84246 5.20120 4.76783 6.01275 5.77804 4.75806 4.36675 2.25786 5.75370 5.62552 36 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00002 11.37178 12.09413 0.61958 0.77255 0.54501 0.86711 16 3.33676 4.20984 3.03414 2.80011 4.51267 2.83998 3.29000 4.76020 3.94310 3.89833 5.03359 3.63774 0.99288 3.01377 3.21764 2.23767 3.17735 4.19662 6.30522 3.57434 37 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00002 11.37195 12.09429 0.61958 0.77255 0.71571 0.67108 17 2.74877 3.76885 2.31488 2.37888 3.61742 3.24058 3.52538 3.69860 2.63550 2.91473 4.84695 2.66254 2.25795 3.50196 3.23430 2.25812 3.37694 2.80731 4.82464 4.09953 38 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.31263 11.37195 1.31503 0.61958 0.77255 0.71571 0.67108 18 2.73969 4.69288 2.19070 2.22849 4.34443 2.45784 3.78400 3.89714 3.47433 3.14330 5.35930 2.21382 5.09736 3.50288 2.84823 1.75968 3.18192 3.48752 4.07414 3.83404 39 - T 2.48314 3.87251 2.82093 2.80039 3.46429 2.47233 3.77686 3.20313 2.75587 2.67727 4.21368 2.96149 2.79719 3.26038 2.98363 2.32149 2.76547 3.00493 4.51530 3.65722 0.85367 0.60301 3.61235 0.06208 2.81018 0.17002 1.85566 19 4.18467 3.14834 5.42288 4.89458 1.14563 4.55592 10.02654 2.04797 6.20527 1.10980 4.08371 4.59576 4.40073 6.25241 9.66790 4.46843 4.19916 2.92515 4.57306 4.70144 42 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00002 11.30854 12.03088 0.61958 0.77255 5.11702 0.00601 20 2.60761 3.85802 2.98938 2.26620 4.25898 2.33484 4.15187 4.05991 2.07729 3.19340 4.21258 3.66413 3.30409 2.44008 2.88779 2.02998 3.23891 3.76761 4.44540 4.16681 43 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00002 11.30854 12.03088 0.61958 0.77255 0.02886 3.55984 21 2.54786 4.29728 3.22515 2.95175 3.83267 2.15836 2.81984 4.90672 2.39281 3.58046 5.38155 1.81677 3.93918 3.14838 2.92286 2.10233 3.29282 3.41695 6.04676 4.20510 44 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00002 11.37057 12.09291 0.61958 0.77255 0.11525 2.21774 22 3.36655 2.64358 5.79496 5.64898 2.82264 5.24441 4.95326 3.34815 5.38374 0.60758 2.96585 3.20620 4.24061 4.77081 5.04814 3.53959 4.51649 3.00095 4.39419 4.79586 45 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00001 11.37210 * 0.61958 0.77255 0.00000 * //