HMMER3/b [3.0 | March 2010] NAME HHH ACC PF00633.18 DESC Helix-hairpin-helix motif LENG 30 ALPH amino RF no CS yes MAP yes DATE Mon Oct 8 22:40:55 2012 NSEQ 104 EFFN 104.000000 CKSUM 3878936058 GA 24.00 24.00; TC 24.00 24.00; NC 23.90 23.90; BM hmmbuild HMM.ann SEED.ann SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq STATS LOCAL MSV -7.3081 0.73132 STATS LOCAL VITERBI -7.1860 0.73132 STATS LOCAL FORWARD -3.9566 0.73132 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 2.27763 5.00817 3.05698 2.43148 3.87081 2.38661 4.28057 2.55072 2.65339 2.26794 4.15459 3.57587 3.09273 3.54068 3.09592 2.77429 2.93472 2.59628 5.80818 3.86829 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00039 8.23511 8.95745 0.61958 0.77255 0.00000 * 1 3.29139 7.79755 2.50837 2.50856 3.48507 2.91759 3.43492 3.53457 2.40807 3.27827 6.83785 3.68565 6.45053 3.61337 2.15364 1.46732 2.11118 6.18891 8.22943 6.81766 1 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00039 8.23511 8.95745 0.61958 0.77255 0.48576 0.95510 2 3.41711 6.98966 4.22741 2.79857 2.24933 4.00814 2.78634 2.94331 2.77985 1.32995 4.32887 6.39033 3.35916 6.26543 4.27031 3.86579 3.89691 2.44600 7.59285 2.02211 2 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00039 8.23511 8.95745 0.61958 0.77255 0.48576 0.95510 3 3.46996 7.79757 2.21880 1.55025 7.14399 1.99622 3.54706 3.42018 2.35339 3.10381 6.83787 2.52290 6.45054 2.57420 3.32886 2.77341 5.51489 3.06410 8.22945 6.81768 3 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00039 8.23511 8.95745 0.61958 0.77255 0.48576 0.95510 4 2.54364 7.79755 3.05771 3.12167 3.90159 1.20023 3.35590 6.63089 2.69910 3.70643 3.78742 2.07852 6.45053 3.35369 2.56796 2.47095 4.15974 6.18891 8.22943 4.06656 4 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00039 8.23511 8.95745 0.61958 0.77255 0.48576 0.95510 5 3.13454 7.70080 2.32380 2.78934 4.78825 2.79593 4.43367 1.72492 2.64112 1.57659 4.03709 3.88015 6.47918 3.36052 3.52358 4.09284 5.52688 2.01650 8.15922 6.77486 5 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00039 8.23511 8.95745 0.61958 0.77255 0.48576 0.95510 6 2.64928 7.30541 5.95982 3.14018 2.70108 6.25989 6.48512 1.94940 2.33524 2.88083 3.44052 2.42489 2.82317 3.34347 2.36004 2.87440 3.51601 2.24353 7.85429 4.22376 6 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00039 8.23511 8.95745 0.61958 0.77255 0.48576 0.95510 7 2.53348 7.79660 2.75218 2.34172 3.45310 6.05731 6.24427 6.62917 3.01921 3.96863 4.30857 2.42502 1.28681 3.49706 2.65304 3.44500 2.30047 3.14690 8.22875 6.81725 7 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00039 8.23511 8.95745 0.61958 0.77255 0.48576 0.95510 8 0.74450 4.26575 2.42053 3.73597 7.14303 3.96559 4.44001 4.01839 2.68216 4.66207 6.83730 2.89802 3.42288 3.75605 2.96831 4.32927 2.73618 3.57811 8.22897 6.81739 8 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00039 8.23511 8.95745 0.61958 0.77255 0.48576 0.95510 9 2.95109 7.79991 2.32121 4.07284 7.14635 3.64392 6.24587 6.63333 2.88971 3.96895 6.84027 2.83281 6.45235 4.13923 3.29064 1.07160 1.32080 6.19129 8.23173 6.81986 9 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00039 8.23511 8.95745 0.61958 0.77255 0.48576 0.95510 10 3.55938 7.13880 4.17919 2.50428 3.04641 6.37071 4.12995 1.98160 2.79617 2.13628 3.43854 6.09428 2.61825 3.68507 1.91515 5.61273 3.25495 2.01640 7.71810 3.32787 10 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00039 8.23511 8.95745 0.61958 0.77255 0.48576 0.95510 11 2.45084 7.79779 1.72862 0.91440 4.77386 6.05711 6.24405 3.54865 2.28386 6.10367 6.83809 3.99792 3.81717 3.94539 3.62241 2.84180 3.21260 6.18918 8.22965 6.81785 11 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00039 8.23511 8.95745 0.61958 0.77255 0.48576 0.95510 12 3.33903 7.79580 1.87472 0.77743 7.14136 3.78584 6.24461 4.68451 3.66351 3.06785 4.50448 4.19085 6.45109 2.38048 5.47201 2.95697 3.44950 6.18670 3.41305 6.81694 12 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00039 8.23511 8.95745 0.61958 0.77255 0.48576 0.95510 13 3.68135 8.71091 9.62354 9.02794 3.68809 9.17864 9.35164 1.98443 8.93670 0.26598 4.30731 9.39586 8.86771 4.05295 8.71843 8.66329 7.78620 4.34476 8.95776 8.16630 13 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00039 8.23511 8.95745 0.61958 0.77255 0.48576 0.95510 14 2.21885 3.39506 3.74928 2.27555 7.07620 4.20519 6.26009 3.46798 2.55009 1.61204 2.56768 4.20371 6.46383 2.45989 3.66879 3.09359 2.46953 2.66609 8.19598 6.79742 14 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00039 8.23511 8.95745 0.61958 0.77255 0.48576 0.95510 15 1.54322 7.79775 2.59863 2.95002 7.14423 3.04211 4.42627 6.63120 1.80007 3.06564 6.83804 3.75459 6.45055 2.59448 3.11381 1.77004 2.70973 6.18915 8.22959 6.81778 15 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00039 8.23511 8.95745 0.61958 0.77255 0.48576 0.95510 16 3.91721 3.43564 8.96650 8.53591 7.35194 8.53618 9.44245 1.59942 8.53197 0.82504 7.03382 8.71293 8.69470 3.89665 8.71745 8.01324 7.03923 1.26216 9.62066 8.40137 16 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00039 8.23511 8.95745 0.61958 0.77255 0.48576 0.95510 17 3.42984 7.79903 3.36465 2.01244 7.14551 6.05796 4.19291 6.63248 2.36121 6.10489 4.74817 3.88010 0.61547 4.15280 3.83118 2.83102 4.31191 6.19043 8.23083 6.81901 17 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00039 8.23511 8.95745 0.61958 0.77255 0.48576 0.95510 18 7.08230 9.83979 3.14281 3.73640 9.23837 0.09466 7.78788 8.93923 7.14900 4.15798 9.33819 6.46737 7.74610 7.00187 8.00747 6.87205 7.45187 8.38358 10.39970 8.73956 18 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00039 8.23511 8.95745 0.61958 0.77255 0.48576 0.95510 19 6.96228 8.08379 9.16817 8.75861 7.27863 8.83157 9.85324 0.87213 8.80017 3.35004 3.99796 9.00908 8.87874 8.98250 8.98434 8.36285 7.21926 0.67327 4.25109 8.61848 19 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00039 8.23511 8.95745 0.61958 0.77255 0.48576 0.95510 20 5.99218 7.90693 8.61058 8.68227 8.92444 0.11559 9.04826 8.47090 8.54630 8.15953 8.86008 7.69533 7.60058 8.53337 8.41361 2.64149 3.45764 7.41087 10.24513 9.30970 20 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00039 8.23511 8.95745 0.61958 0.77255 0.48576 0.95510 21 2.94527 7.79677 4.04045 1.64244 7.14282 3.43575 6.24422 4.47640 2.28795 4.54742 4.62212 5.52437 1.20806 3.41794 1.84557 3.27699 3.97630 4.11302 8.22887 6.81733 21 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00039 8.23511 8.95745 0.61958 0.77255 0.48576 0.95510 22 2.29604 7.77298 5.54655 2.36192 7.10765 3.44133 6.25338 3.09261 1.06009 6.07374 6.81643 5.53698 6.45859 3.78561 3.70337 2.56348 3.31779 2.76121 8.21187 1.95746 22 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00039 8.23511 8.95745 0.61958 0.77255 0.48576 0.95510 23 4.01935 6.87244 7.41267 6.79838 5.96621 6.65562 6.98607 3.27685 1.90385 2.81958 2.26413 6.80307 7.01959 6.72917 2.69892 3.20507 0.88334 2.32874 7.49486 6.31807 23 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00039 8.23511 8.95745 0.61958 0.77255 0.48576 0.95510 24 0.25248 4.45658 7.43427 6.81869 4.30334 3.78550 6.98867 4.16922 4.25689 4.11811 5.98801 6.81161 7.02019 4.47941 3.73660 5.96677 5.72228 2.53938 7.49077 6.31454 24 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00039 8.23511 8.95745 0.61958 0.77255 0.48576 0.95510 25 2.52356 7.79764 2.13626 1.60249 4.57606 2.49743 3.40421 3.76194 2.91391 4.34371 6.83794 2.12836 6.45050 2.57206 2.37261 3.09124 4.04483 6.18903 8.22950 3.61063 25 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00039 8.23511 8.95745 0.61958 0.77255 0.48576 0.95510 26 1.27422 4.29920 3.17585 2.90926 7.13974 4.50416 3.60013 4.82595 2.13618 2.79526 4.40497 4.24330 6.45133 3.21893 2.47652 2.33638 3.14812 2.39757 8.22737 6.81643 26 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00039 8.23511 8.95745 0.61958 0.77255 0.48576 0.95510 27 4.49275 4.39118 8.92736 8.50153 3.25364 8.50056 9.43502 0.62158 8.50031 2.15210 7.12464 8.67166 8.67944 8.81428 8.70826 7.97550 4.14659 1.32528 9.68019 8.40992 27 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00039 8.23511 8.95745 0.61958 0.77255 0.48576 0.95510 28 2.45723 4.23947 7.46352 6.84709 2.92874 6.65576 2.82104 2.34024 2.83626 1.00539 2.83587 6.82307 7.01932 6.75688 2.73759 4.49139 3.45927 2.82621 7.47950 3.37746 28 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00039 8.23511 8.95745 0.61958 0.77255 0.48576 0.95510 29 2.17215 3.07633 2.28857 1.74654 7.14316 3.15800 4.62043 4.57521 2.79243 2.66256 6.83738 3.28121 6.45068 2.96890 3.37144 1.71814 3.73531 3.72575 4.18207 6.81743 29 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00039 8.23511 8.95745 0.61958 0.77255 0.48576 0.95510 30 2.27564 4.35771 7.41230 3.89261 1.88500 3.89389 3.15073 2.02594 3.65457 3.24403 4.36663 4.12666 7.01253 6.72945 4.58071 2.81928 2.90048 2.63697 3.90462 1.58888 30 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00027 8.23498 * 0.61958 0.77255 0.00000 * //