HMMER3/b [3.0 | March 2010] NAME TFIIS_C ACC PF01096.13 DESC Transcription factor S-II (TFIIS) LENG 39 ALPH amino RF no CS no MAP yes DATE Sun Oct 7 04:10:52 2012 NSEQ 109 EFFN 6.563019 CKSUM 2704700386 GA 20.70 20.70; TC 20.70 20.70; NC 20.60 20.60; BM hmmbuild HMM.ann SEED.ann SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq STATS LOCAL MSV -8.0244 0.71952 STATS LOCAL VITERBI -8.1992 0.71952 STATS LOCAL FORWARD -4.3197 0.71952 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 2.70263 2.23496 3.09906 2.64705 3.12054 3.27867 3.75438 3.27439 2.64960 3.15172 3.68527 3.28413 3.46206 2.76461 2.69479 2.86449 2.62003 3.02584 3.99959 3.43084 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00560 5.58396 6.30630 0.61958 0.77255 0.00000 * 1 2.07497 4.77804 4.43439 3.85697 2.32568 4.27787 3.01360 1.96166 2.60637 2.44846 3.88934 3.86571 4.65117 3.35704 3.25057 3.40362 2.48933 2.37884 5.38031 3.39788 1 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00560 5.58396 6.30630 0.61958 0.77255 0.48576 0.95510 2 2.86606 5.64782 3.24509 2.09186 3.83953 3.80426 3.96561 3.45465 1.83465 3.43426 4.44305 3.40931 2.64117 2.14003 2.90104 2.87964 2.37708 3.17862 6.08639 4.68140 2 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00560 5.58396 6.30630 0.61958 0.77255 0.48576 0.95510 3 5.52634 0.03014 6.70804 6.77490 6.95919 5.55456 7.23886 6.87873 6.82441 6.37695 7.58412 6.71328 6.27375 7.09711 6.63980 5.79819 6.06728 6.39698 7.66085 7.18400 3 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01312 5.58396 4.68062 0.61958 0.77255 0.48576 0.95510 4 3.05089 5.65116 3.06442 2.32420 4.35026 2.69445 4.12012 3.91225 2.57624 3.82398 4.69355 2.97219 1.25567 2.83912 3.07909 2.90572 3.15681 3.79298 6.08779 4.00477 4 - - 2.68620 4.42227 2.77522 2.73125 3.46356 2.40515 3.72497 3.29356 2.67743 2.69357 4.24692 2.90305 2.73742 3.18149 2.89803 2.37889 2.77522 2.98521 4.58479 3.61505 0.05114 3.30062 4.34315 0.28852 1.38379 0.46332 0.99207 5 2.36846 5.66329 3.15875 2.28934 5.00798 3.44347 4.11456 4.49367 1.45293 3.72475 4.70405 2.65207 4.32094 3.07725 2.30027 2.49390 3.06527 3.08155 6.09619 3.99530 6 - - 2.68638 4.42152 2.77460 2.73112 3.46373 2.40524 3.72468 3.29374 2.67750 2.69374 4.24709 2.90322 2.73722 3.18139 2.89800 2.37901 2.77515 2.98538 4.58497 3.61523 0.11523 2.23502 6.29517 0.91117 0.51425 0.54024 0.87372 6 5.50584 0.03071 6.69352 6.75984 6.94082 5.53893 7.22362 6.85404 6.80762 6.35681 7.56335 6.69568 6.25868 7.08044 6.62416 5.77741 6.04702 6.37362 7.64703 7.16578 10 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00566 5.57282 6.29517 0.61958 0.77255 0.54024 0.87372 7 2.88393 5.66786 2.76374 2.79398 5.01352 1.47510 2.78683 4.49987 1.99596 3.97329 4.70847 2.73371 4.32231 2.56277 2.96605 2.71159 3.30255 4.05884 6.10004 4.20116 11 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00566 5.57282 6.29517 0.61958 0.77255 0.45314 1.00958 8 2.72482 4.26701 3.41571 2.60598 4.19149 2.50276 2.32892 4.47321 2.24938 3.95643 4.69667 2.10899 4.33005 2.60787 3.24252 1.97098 3.26118 3.43505 6.09108 4.21415 12 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00560 5.58396 6.30630 0.61958 0.77255 0.48576 0.95510 9 2.89329 5.67275 2.45860 2.20924 5.01891 3.20423 2.91342 4.50565 2.12375 3.78139 3.95523 2.52652 3.55933 3.14301 2.00821 2.75346 2.43899 3.90315 6.10478 4.37223 13 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00560 5.58396 6.30630 0.61958 0.77255 0.48576 0.95510 10 3.15974 5.67198 2.77969 1.54027 5.01775 2.95751 3.93256 4.23102 1.78031 3.83272 4.26536 2.33665 4.32673 3.21634 2.40702 3.01639 2.96179 3.92028 6.10423 4.02079 14 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00560 5.58396 6.30630 0.61958 0.77255 0.48576 0.95510 11 1.28296 2.60869 4.97506 4.37400 3.74514 4.06850 4.69980 2.67552 3.77487 2.57493 2.81360 4.05031 4.74482 3.85639 4.29282 3.49338 2.21966 2.08474 5.26697 3.79921 15 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00560 5.58396 6.30630 0.61958 0.77255 0.48576 0.95510 12 2.69914 3.63119 5.11690 3.98230 2.92900 4.39849 3.47933 2.78864 4.31083 2.55135 3.28331 4.53243 4.76304 4.45812 3.68085 2.52032 2.30222 1.80575 4.27795 1.71557 16 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02648 5.58396 3.79966 0.61958 0.77255 0.48576 0.95510 13 3.11522 4.14244 5.04546 4.43953 1.37091 4.37754 4.20200 2.86229 3.47093 2.66661 3.51867 4.49178 3.04468 4.41283 3.97881 3.30797 3.24952 2.71174 2.60371 1.91519 17 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00572 5.56319 6.28554 0.61958 0.77255 0.58463 0.81488 14 3.02280 4.62130 5.05207 3.90898 1.78183 4.37838 4.23731 2.47776 4.04158 2.51686 2.82767 3.83982 4.74346 4.13013 3.09072 3.16368 2.47810 2.13637 2.69046 2.59707 18 - - 2.68622 4.42229 2.77506 2.73109 3.46296 2.40517 3.72499 3.29358 2.67745 2.69359 4.24694 2.90351 2.73744 3.18150 2.89805 2.37891 2.77524 2.98522 4.58481 3.61507 0.09490 2.78829 3.53999 0.20883 1.66884 0.42856 1.05397 15 2.63422 5.37262 3.55022 2.21084 4.61453 3.98648 3.85766 3.12537 2.98610 2.98991 2.78633 3.31774 4.37647 1.40265 3.45164 2.80312 2.32185 3.48620 5.87254 4.53416 20 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00575 5.55701 6.27935 0.61958 0.77255 0.61192 0.78156 16 2.44475 5.00078 3.41358 3.35753 4.15360 4.12418 4.36375 2.43665 2.47008 1.76502 2.79273 3.80050 4.50632 2.84553 2.44834 2.70037 3.41438 2.35905 5.56904 4.31612 21 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00575 5.55701 6.27935 0.61958 0.77255 0.41426 1.08126 17 4.73113 6.70734 4.29658 4.17165 5.41065 4.93380 3.69946 5.90324 3.78084 5.19957 6.22232 4.62080 5.51622 0.18317 3.98917 4.68835 5.00289 5.54744 6.66218 5.22654 22 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00560 5.58396 6.30630 0.61958 0.77255 0.48576 0.95510 18 3.23598 4.69154 4.78251 4.19197 3.79340 3.62922 4.66202 1.71990 4.05732 2.36216 2.82218 4.36568 4.72033 2.93161 4.21040 3.14574 1.18249 2.83192 5.30717 4.11882 23 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00560 5.58396 6.30630 0.61958 0.77255 0.48576 0.95510 19 4.52392 6.45094 5.39717 4.29633 6.13809 4.22239 4.70166 5.34133 2.39524 4.65393 3.64375 4.54097 5.31176 3.83118 0.29842 4.50896 4.59653 5.05827 6.58419 5.57250 24 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00560 5.58396 6.30630 0.61958 0.77255 0.48576 0.95510 20 2.13303 4.90612 3.15362 2.93093 4.95580 3.14992 4.18237 4.42219 2.73690 3.93458 4.69030 3.46698 4.36614 3.29064 2.39623 1.02878 3.03209 4.00601 6.09150 4.70264 25 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00560 5.58396 6.30630 0.61958 0.77255 0.48576 0.95510 21 0.78883 5.10821 3.94795 3.39332 4.35217 2.67874 4.44062 3.27766 2.95380 3.25183 3.92958 3.83338 4.53936 3.68859 3.76101 2.52175 3.26329 3.45969 5.74175 4.47914 26 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00560 5.58396 6.30630 0.61958 0.77255 0.48576 0.95510 22 3.30728 7.07824 0.32492 2.35389 6.40915 4.33232 5.04668 6.01549 4.28953 5.44769 6.38373 3.78607 5.05116 4.24023 5.05500 4.12269 3.56392 5.50435 7.60248 5.94095 27 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00560 5.58396 6.30630 0.61958 0.77255 0.48576 0.95510 23 4.11665 6.64286 3.22958 0.33808 6.16971 4.31044 4.99272 5.72684 4.06300 5.19728 6.08035 3.11121 4.99791 4.17567 4.65998 4.00333 2.58223 5.22151 7.32971 5.78984 28 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00560 5.58396 6.30630 0.61958 0.77255 0.48576 0.95510 24 2.83460 5.69581 3.56708 2.48361 5.33506 1.95595 4.55682 4.81541 3.38014 4.33734 5.10448 3.22373 0.97864 3.68781 3.87237 2.39137 3.36591 4.33372 6.49412 5.10657 29 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00560 5.58396 6.30630 0.61958 0.77255 0.48576 0.95510 25 2.50371 5.30508 3.62816 2.44039 4.52375 4.02751 4.23725 3.45568 3.05952 3.26459 1.43791 3.57943 2.60142 2.53629 3.51334 2.55375 2.61884 3.62590 5.82267 4.50461 30 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00560 5.58396 6.30630 0.61958 0.77255 0.48576 0.95510 26 3.23552 4.84326 4.33892 3.76339 3.97168 4.26191 4.54232 2.66791 3.40892 2.65801 3.95838 4.09924 4.64200 3.95966 3.18018 2.58140 0.83059 2.74644 5.44698 4.23460 31 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00560 5.58396 6.30630 0.61958 0.77255 0.48576 0.95510 27 3.22885 4.73181 4.60111 4.01680 3.83863 4.31527 4.61015 2.16001 3.05586 1.85675 3.60818 3.71487 4.68595 3.79296 2.42643 3.46019 1.90212 1.67547 5.34008 4.14407 32 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00560 5.58396 6.30630 0.61958 0.77255 0.48576 0.95510 28 3.10093 4.69366 4.88424 3.96199 0.73966 4.38305 4.67917 2.79215 3.57698 2.78310 3.57350 4.42301 4.74928 4.32249 3.33405 3.67967 3.49007 2.94378 5.28222 2.84738 33 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00560 5.58396 6.30630 0.61958 0.77255 0.48576 0.95510 29 2.62471 3.33510 5.19923 4.58793 1.97131 4.42550 3.66442 2.74713 4.37740 2.70098 3.75479 4.57790 4.78878 4.51036 4.39211 3.73636 3.49203 2.04739 5.23001 1.19904 34 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00560 5.58396 6.30630 0.61958 0.77255 0.48576 0.95510 30 2.95266 4.53357 3.53046 2.42802 4.69942 3.98706 4.18644 3.00100 1.80413 3.38821 4.19300 3.25904 4.37780 2.88208 2.43610 2.93461 2.06275 2.17600 5.92936 3.79123 35 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00560 5.58396 6.30630 0.61958 0.77255 0.48576 0.95510 31 5.52634 0.03014 6.70804 6.77490 6.95919 5.55456 7.23886 6.87873 6.82441 6.37695 7.58412 6.71328 6.27375 7.09711 6.63980 5.79819 6.06728 6.39698 7.66085 7.18400 36 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.04384 5.58396 3.24080 0.61958 0.77255 0.48576 0.95510 32 2.55302 3.04659 3.47436 3.33724 3.62698 4.14502 4.16952 2.73258 2.45424 2.22984 3.71964 3.08533 3.84245 3.56035 3.31350 2.77843 1.98714 2.27398 5.51480 3.52938 37 - - 2.68628 4.42235 2.77529 2.73115 3.46364 2.40523 3.72504 3.29364 2.67734 2.69365 4.24699 2.90335 2.73749 3.18092 2.89789 2.37881 2.77529 2.98506 4.58487 3.61513 0.07857 2.60823 6.26828 0.67613 0.71046 0.39113 1.12791 33 2.55753 5.67294 2.40508 1.92416 5.01912 3.57154 3.86741 4.50588 1.87237 3.97869 4.27644 2.05753 4.32651 3.00395 2.99057 2.36461 2.86397 3.62980 6.10495 4.69332 40 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00560 5.58396 6.30630 0.61958 0.77255 0.48576 0.95510 34 5.52634 0.03014 6.70804 6.77490 6.95919 5.55456 7.23886 6.87873 6.82441 6.37695 7.58412 6.71328 6.27375 7.09711 6.63980 5.79819 6.06728 6.39698 7.66085 7.18400 41 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01873 5.58396 4.21332 0.61958 0.77255 0.48576 0.95510 35 2.83228 5.66026 3.00128 2.71028 4.53232 1.36883 4.11460 4.48872 1.93371 3.79868 4.26730 2.51940 4.32081 2.51581 3.20539 2.80357 3.14681 4.05010 6.09381 4.68378 42 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00567 5.57090 6.29325 0.61958 0.77255 0.54929 0.86123 36 2.86377 5.64016 3.18756 2.55724 3.26187 3.93119 1.70865 4.45400 1.95230 3.70570 4.68350 2.17024 4.32450 3.00534 3.34910 2.84236 3.03376 4.02536 6.07891 2.89049 43 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00567 5.57090 6.29325 0.61958 0.77255 0.44799 1.01863 37 3.04475 5.66480 3.16823 2.56087 5.00743 3.65933 3.36317 3.72741 2.07691 3.47543 4.70611 2.98230 4.32813 2.40975 1.58353 2.90410 2.43240 2.81060 6.09893 4.68951 44 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00560 5.58396 6.30630 0.61958 0.77255 0.48576 0.95510 38 3.94584 5.33607 4.51010 3.65429 1.61405 4.95314 4.64680 3.82208 4.67334 3.45521 3.98977 4.83233 5.29945 4.04708 4.78345 4.26499 4.17272 3.64716 0.74563 2.61503 45 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00560 5.58396 6.30630 0.61958 0.77255 0.48576 0.95510 39 3.08746 5.64738 3.48309 2.92065 4.97639 3.98221 4.15822 3.43708 1.84950 3.93952 4.69526 3.28891 4.37285 2.54689 1.34067 2.76355 2.17430 3.54208 6.08440 4.69908 46 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00377 5.58213 * 0.61958 0.77255 0.00000 * //