HMMER3/b [3.0 | March 2010] NAME zf-dskA_traR ACC PF01258.12 DESC Prokaryotic dksA/traR C4-type zinc finger LENG 36 ALPH amino RF no CS yes MAP yes DATE Sun Oct 7 04:13:26 2012 NSEQ 241 EFFN 241.000000 CKSUM 279493057 GA 22.80 22.80; TC 22.80 22.80; NC 22.70 22.70; BM hmmbuild HMM.ann SEED.ann SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq STATS LOCAL MSV -7.4820 0.72020 STATS LOCAL VITERBI -7.9934 0.72020 STATS LOCAL FORWARD -4.1928 0.72020 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 2.68151 2.25721 3.06438 2.21039 3.84664 2.49357 4.02610 2.94202 2.94114 2.83545 4.29377 3.94310 2.87714 3.19091 2.53619 3.16936 3.33245 2.89615 5.59275 3.26607 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00017 9.07098 9.79332 0.61958 0.77255 0.00000 * 1 3.85122 8.60187 3.66218 2.45556 4.14341 1.04121 4.55167 4.03865 2.48471 4.37492 5.51795 4.45980 2.01536 3.27738 2.17195 3.24048 4.33952 4.94915 5.32727 4.66758 1 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00017 9.07098 9.79332 0.61958 0.77255 0.48576 0.95510 2 3.37840 8.57766 2.94084 3.23827 7.91212 3.01365 7.05844 2.06731 3.10123 3.13732 4.40255 3.58782 2.06783 4.39561 3.23977 1.79816 2.24774 2.27452 4.38988 5.51132 2 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00017 9.07098 9.79332 0.61958 0.77255 0.48576 0.95510 3 2.89309 8.17448 4.52445 2.68339 1.79252 3.51663 4.15914 3.17525 2.62924 2.33063 7.25933 6.62230 5.11105 4.70648 3.87260 3.96811 3.34329 2.66452 3.90910 1.34590 3 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00017 9.07098 9.79332 0.61958 0.77255 0.48576 0.95510 4 3.31695 8.60313 4.00939 2.63133 5.63277 1.01424 3.95538 4.63832 2.23114 4.05992 7.64343 3.64383 3.55791 3.73331 2.21019 2.20712 3.23767 4.44092 9.03500 5.57624 4 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00262 9.07098 5.99039 0.61958 0.77255 0.48576 0.95510 5 3.09401 5.14820 4.40872 2.82838 2.66360 4.00182 3.51659 2.00881 2.25736 3.30286 5.13481 3.32047 7.34721 5.35899 2.53057 2.00636 2.67634 2.63233 4.27091 2.68530 5 - E 2.67862 4.39757 2.79270 2.73977 3.47451 2.42334 3.73232 3.26045 2.68312 2.68531 4.23800 2.92191 2.74930 3.17063 2.88144 2.39463 2.77763 2.91608 4.57848 3.62481 0.55153 0.85832 9.79087 0.69304 0.69325 0.32017 1.29472 6 10.63107 0.00041 10.48339 10.57687 11.13536 9.54784 11.09211 11.58830 10.77210 10.59174 11.98235 10.94248 10.17796 11.09210 10.50209 11.09039 10.99885 11.25565 11.37106 11.38953 8 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00017 9.07098 9.79332 0.61958 0.77255 0.48576 0.95510 7 2.33232 4.52816 1.93543 1.42669 7.94870 4.96250 4.85217 3.22024 3.55489 3.07171 4.79915 3.47298 2.70181 2.48036 3.23494 2.41782 4.23249 3.12421 9.03460 7.62299 9 - T 2.68830 4.42437 2.76896 2.72512 3.46566 2.40725 3.72706 3.29566 2.67953 2.69567 4.24902 2.89581 2.73951 3.18358 2.90013 2.38099 2.77731 2.98730 4.58689 3.59791 0.04826 3.12411 5.76283 0.69212 0.69417 0.48576 0.95510 8 2.52783 4.63401 1.76462 1.82503 5.10273 2.98948 4.25604 3.55277 2.69326 3.97723 4.35837 3.57631 7.25399 2.31598 2.53308 3.05511 3.38240 2.44635 9.02972 5.30015 12 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00017 9.06788 9.79023 0.61958 0.77255 0.29410 1.36729 9 6.85814 0.08928 9.56079 9.62968 9.78119 7.56967 9.92141 9.33502 9.42696 9.02129 9.72457 8.57574 8.46384 9.41784 9.27833 3.75062 2.83255 8.27589 11.08586 10.16929 13 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00017 9.07098 9.79332 0.61958 0.77255 0.48576 0.95510 10 4.96930 8.69679 3.26303 2.87609 8.04258 0.33694 2.44565 7.53059 4.01730 4.78334 7.73917 3.72853 7.33212 4.25536 4.07353 6.13630 5.21793 7.08820 9.12628 5.19143 14 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00017 9.07098 9.79332 0.61958 0.77255 0.48576 0.95510 11 3.36734 4.56353 2.33825 0.41779 5.38926 3.98100 7.04980 5.01559 2.84780 4.84039 7.64274 4.16979 7.25633 3.17630 4.22781 4.56706 4.72913 4.53835 9.03444 7.62290 15 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00017 9.07098 9.79332 0.61958 0.77255 0.48576 0.95510 12 2.38001 8.59861 3.02973 1.64818 5.31762 3.18470 4.83115 4.90383 2.83511 3.00566 3.42159 4.28009 1.54253 3.66856 4.28502 3.35301 3.22557 4.35710 3.96485 2.40239 16 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00017 9.07098 9.79332 0.61958 0.77255 0.48576 0.95510 13 3.40350 8.13190 8.84801 8.27376 3.67537 8.11435 4.59406 0.59456 8.09294 4.49935 7.28744 8.27864 8.44533 8.24620 8.12455 7.45155 3.49152 1.25060 8.95398 3.03942 17 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00017 9.07098 9.79332 0.61958 0.77255 0.48576 0.95510 14 2.56915 8.44385 3.65883 2.85675 3.92930 2.56274 7.11082 4.08167 4.76043 2.92539 2.15023 3.93880 1.00177 3.97716 4.19215 3.54296 4.08738 5.23764 5.30960 2.65447 18 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00017 9.07098 9.79332 0.61958 0.77255 0.48576 0.95510 15 2.82910 8.53723 2.11599 0.97713 3.23002 4.65995 7.07326 3.02449 3.37782 2.40942 4.47582 3.81591 3.03435 4.45647 4.25671 3.26494 4.41789 3.32654 5.51382 3.73349 19 - G 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00017 9.07098 9.79332 0.61958 0.77255 0.48576 0.95510 16 1.71634 3.63204 3.40561 1.87424 7.94930 2.81615 3.59099 2.48114 2.71025 5.27319 5.25419 3.59597 2.75520 2.53161 3.00649 2.96103 2.99744 4.26385 9.03488 3.77295 20 - G 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.05881 9.07098 2.86473 0.61958 0.77255 0.48576 0.95510 17 8.04870 9.86409 2.58444 7.77952 4.69348 8.45650 7.99395 8.72323 2.20567 4.96829 3.73388 7.95118 8.71034 7.15235 0.28272 8.01278 4.84381 8.48526 9.72067 4.67031 21 - . 2.68777 4.42385 2.76035 2.72838 3.46513 2.40672 3.71522 3.29513 2.67900 2.69514 4.24849 2.90506 2.73899 3.18306 2.89960 2.38046 2.77679 2.98678 4.58636 3.61663 0.09911 2.65715 3.72090 0.00822 4.80528 2.82867 0.06091 18 2.90432 7.62530 5.40387 2.77201 4.92842 3.94681 5.13236 2.67704 7.14305 0.78642 3.75286 7.41194 7.70803 3.72389 1.86084 4.94398 3.16875 2.72248 8.24240 7.05931 23 - . 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00019 8.98790 9.71024 0.61958 0.77255 3.13732 0.04437 19 3.16068 5.79877 3.82274 1.95247 5.54176 3.93016 5.42943 3.14630 2.36150 2.59596 2.99366 4.51634 3.68275 2.45465 1.61875 5.98987 6.24665 1.73940 8.91295 7.51745 24 - . 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00801 8.98790 4.84745 0.61958 0.77255 3.13732 0.04437 20 0.89336 7.84237 7.00932 3.96210 4.14072 7.10663 4.22007 2.83248 3.31294 2.25593 4.30252 3.89711 2.56215 3.15156 3.08601 4.37259 3.67668 2.55580 8.42476 3.74206 25 - . 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00019 8.98008 9.70243 0.61958 0.77255 3.21757 0.04088 21 4.16668 5.76563 3.53858 2.92442 3.66498 2.89027 5.35200 2.35137 3.19321 1.92889 3.04097 3.07738 7.23578 3.35930 2.20655 2.29428 4.35686 1.94561 8.79288 3.35276 26 - . 2.68292 4.42515 2.77810 2.71963 3.46644 2.40187 3.72785 3.29644 2.67421 2.69645 4.24980 2.90637 2.74030 3.17103 2.90091 2.38177 2.77810 2.98809 4.58767 3.61793 0.12238 2.71907 3.01089 0.69240 0.69390 1.25478 0.33567 22 4.20189 8.48889 2.25906 1.98105 7.83451 2.90139 6.93753 5.01323 4.75565 3.68600 4.61584 3.25540 0.80458 2.96736 4.12534 2.90267 4.74774 4.34732 5.21299 7.50996 29 - . 2.68696 4.42303 2.77020 2.73201 3.46432 2.40591 3.72573 3.29432 2.67819 2.68809 4.24768 2.90425 2.73818 3.18225 2.89879 2.37965 2.77598 2.98597 4.58555 3.61581 0.03725 3.31035 9.67789 0.01652 4.11170 0.14436 2.00678 23 3.09102 8.55021 2.40280 3.10039 3.44066 0.79206 3.58443 4.62023 4.64867 3.39786 7.59543 5.11064 4.02222 3.90267 5.28839 3.70844 2.63732 4.04842 3.58843 2.77369 31 - G 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00017 9.05775 9.78010 0.61958 0.77255 0.12932 2.10940 24 1.45446 2.69595 4.80537 3.16463 7.91427 2.27150 7.05792 4.87173 1.75828 3.74967 5.48331 4.73742 7.26305 3.88087 2.66074 3.98900 2.28040 2.21356 9.01780 5.06287 32 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00017 9.07098 9.79332 0.61958 0.77255 0.48576 0.95510 25 2.91825 5.11116 4.34351 3.18304 3.90489 3.19142 4.85032 2.43496 2.52507 2.03591 4.62732 3.74845 2.63387 3.23331 2.01441 3.45657 2.05732 2.57838 8.99219 5.32257 33 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00017 9.07098 9.79332 0.61958 0.77255 0.48576 0.95510 26 4.33037 4.49360 5.02442 7.66071 2.46060 7.46974 3.77069 2.17421 4.96683 1.18208 3.69488 7.63691 5.32152 4.31251 1.90485 6.78163 3.44692 2.22544 8.29359 2.31661 34 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00017 9.07098 9.79332 0.61958 0.77255 0.48576 0.95510 27 6.81023 0.07810 9.53151 9.59911 9.72711 7.52748 9.88406 9.27845 9.38697 4.76869 9.67252 8.53103 8.42351 9.37621 9.24068 3.47279 3.42481 8.22556 11.06368 10.11368 35 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00017 9.07098 9.79332 0.61958 0.77255 0.48576 0.95510 28 3.01809 7.67590 5.43973 4.91138 3.70498 7.46387 7.79612 1.62211 2.15656 2.17365 3.97252 7.61807 4.89312 7.54865 1.93707 4.58735 3.32259 1.36246 8.29729 4.38999 36 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00017 9.07098 9.79332 0.61958 0.77255 0.48576 0.95510 29 2.06937 4.94940 2.01395 1.66296 4.16065 2.75742 4.46640 7.43666 3.43980 5.40159 7.64352 3.34343 1.83194 4.35064 3.32935 2.16821 3.28644 3.96809 9.03508 7.62328 37 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00017 9.07098 9.79332 0.61958 0.77255 0.48576 0.95510 30 3.22053 0.18812 2.51355 5.08158 9.59166 4.93302 5.37819 9.10887 8.62441 8.76056 4.94906 7.92016 8.41952 8.54124 8.99450 4.86274 7.54824 4.15406 10.93502 9.72374 38 - H 2.69135 4.42742 2.78037 2.73640 3.46871 2.41030 3.73012 3.29871 2.68258 2.69872 4.25207 2.87760 2.74257 3.18663 2.90318 2.38404 2.78037 2.99035 4.58994 3.49936 0.08143 2.63731 5.01313 1.09522 0.40717 0.48576 0.95510 31 1.40019 5.34607 6.48799 3.97256 2.66505 3.38022 4.27590 7.04079 3.16210 4.31126 4.90102 5.10078 7.32724 0.89988 4.04390 4.67486 5.02406 2.63780 8.85703 3.56596 42 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00017 9.06436 9.78671 0.61958 0.77255 0.20348 1.69221 32 2.87915 5.48104 2.18521 1.52542 3.39776 1.95546 2.88382 4.35337 3.40356 5.13945 5.32332 3.30612 5.28763 2.51331 2.70728 2.69860 2.81748 5.32880 9.03500 7.62324 43 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00017 9.07098 9.79332 0.61958 0.77255 0.48576 0.95510 33 3.03475 8.60176 2.62528 1.54208 5.59800 2.18417 4.67872 3.43214 1.89762 3.30556 4.95808 5.29400 3.89079 3.49795 1.97932 3.64919 3.95584 3.18266 9.03403 3.40405 44 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00017 9.07098 9.79332 0.61958 0.77255 0.48576 0.95510 34 2.26479 8.58565 4.07901 2.81479 3.24817 4.30736 2.54883 3.29857 2.95152 2.24880 4.42720 2.47574 5.20136 3.20095 2.18264 2.68035 3.34193 3.51630 5.39473 2.29533 45 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00017 9.07098 9.79332 0.61958 0.77255 0.48576 0.95510 35 4.95511 8.60307 2.73199 0.79483 7.94946 5.03643 2.58665 4.32036 4.48483 6.90891 4.81367 4.09501 2.92626 3.21857 5.09450 3.15893 3.26946 4.35354 9.03496 1.89488 46 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00017 9.07098 9.79332 0.61958 0.77255 0.48576 0.95510 36 2.78754 5.63678 4.00807 2.78784 4.98476 3.69725 2.88495 4.16959 2.08300 3.20055 4.52714 3.68107 2.47895 2.59147 1.81502 4.26269 4.54399 5.27646 5.43307 1.63417 47 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00011 9.07092 * 0.61958 0.77255 0.00000 * //