HMMER3/b [3.0 | March 2010] NAME RHH_1 ACC PF01402.16 DESC Ribbon-helix-helix protein, copG family LENG 39 ALPH amino RF no CS yes MAP yes DATE Sat Oct 6 16:57:02 2012 NSEQ 49 EFFN 49.000000 CKSUM 3398687539 GA 20.50 20.50; TC 20.50 20.50; NC 20.40 20.40; BM hmmbuild HMM.ann SEED.ann SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq STATS LOCAL MSV -7.4610 0.72735 STATS LOCAL VITERBI -7.6128 0.72735 STATS LOCAL FORWARD -3.8622 0.72735 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 2.40915 4.84430 2.95305 2.29637 4.10397 3.39282 4.24455 2.63497 2.61251 2.09725 3.75939 3.51185 4.23741 3.27620 2.36276 2.56283 3.10920 2.70795 5.29169 3.72320 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00083 7.49144 8.21379 0.61958 0.77255 0.00000 * 1 2.73157 6.76077 5.10155 4.54239 5.97658 5.49597 5.70538 2.86047 2.84408 2.24994 5.83830 3.11263 3.91005 3.44529 0.94120 2.73500 3.16703 2.44866 7.27947 5.96393 1 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00083 7.49144 8.21379 0.61958 0.77255 0.48576 0.95510 2 4.88744 6.25176 6.87164 6.25879 2.80593 6.07176 6.41148 1.56291 6.04411 1.71690 3.50262 6.23958 3.64426 6.16984 3.29803 5.38655 2.28506 1.12776 6.89051 5.71834 2 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00083 7.49144 8.21379 0.61958 0.77255 0.48576 0.95510 3 4.59743 7.10875 4.84549 3.06538 4.06377 3.32318 3.79317 5.94029 3.41840 5.41415 3.95941 2.58770 3.15610 2.36267 4.78549 1.31924 1.18582 5.49955 7.54126 6.13013 3 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00083 7.49144 8.21379 0.61958 0.77255 0.48576 0.95510 4 3.16178 7.11637 8.09319 7.63226 3.07319 7.59558 8.35402 0.94494 7.58595 1.86087 6.27055 7.76690 7.80148 7.83551 7.73593 7.03362 3.75032 1.09194 8.64650 7.42190 4 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00083 7.49144 8.21379 0.61958 0.77255 0.48576 0.95510 5 3.10346 7.14789 4.89388 3.36002 6.49932 5.41164 2.38115 5.98168 2.44205 5.45089 6.18873 4.87894 5.80350 3.09137 1.18381 1.61136 2.19788 5.54235 7.57225 3.20474 5 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00083 7.49144 8.21379 0.61958 0.77255 0.48576 0.95510 6 3.55340 2.43766 7.86308 7.29936 3.21170 7.19842 7.61388 1.79397 7.14878 0.69382 3.80675 7.37253 7.41342 7.20003 7.15416 6.56379 6.04848 1.93511 7.87750 6.78632 6 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00083 7.49144 8.21379 0.61958 0.77255 0.48576 0.95510 7 4.59742 7.11130 1.32158 2.68651 6.45770 3.26950 5.55755 5.94465 3.48107 3.74923 6.15163 3.66400 1.80887 3.56343 3.61108 1.75208 2.27207 5.50266 7.54317 3.65690 7 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00083 7.49144 8.21379 0.61958 0.77255 0.48576 0.95510 8 2.56958 7.11045 1.67669 1.35462 6.45689 5.36988 3.84797 5.94383 2.12214 3.75942 6.15076 4.83684 3.22487 3.08311 2.77388 2.88127 3.03797 3.22951 7.54232 6.13054 8 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00083 7.49144 8.21379 0.61958 0.77255 0.48576 0.95510 9 2.99897 7.11095 1.73862 1.13992 6.45738 5.37017 5.55720 5.94433 1.80018 5.41681 3.92569 2.86736 3.81698 3.02737 4.78448 2.82605 3.42967 3.83486 7.54281 6.13100 9 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00083 7.49144 8.21379 0.61958 0.77255 0.48576 0.95510 10 3.14749 6.40310 3.30047 1.88778 5.53521 5.70424 5.96233 2.78356 5.02006 1.43308 2.71464 3.53609 6.08263 2.83672 5.36089 3.20272 2.24254 2.27949 6.98889 3.23875 10 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00083 7.49144 8.21379 0.61958 0.77255 0.48576 0.95510 11 2.02705 6.45362 2.29319 3.47164 3.78739 5.66637 3.73193 2.83529 2.27443 1.88184 2.43740 2.80904 6.04672 5.22824 3.72740 4.90672 3.80209 2.09643 7.03106 3.27466 11 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00083 7.49144 8.21379 0.61958 0.77255 0.48576 0.95510 12 1.57724 7.11781 2.46942 1.15965 6.46418 3.15119 3.84806 5.95129 2.04820 5.42361 6.15828 3.67410 5.76907 2.70868 2.93155 3.59287 4.83466 5.50917 7.54955 6.13742 12 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00083 7.49144 8.21379 0.61958 0.77255 0.48576 0.95510 13 2.24677 7.04645 4.87997 2.14990 3.98254 3.22688 5.57842 2.89382 1.82099 2.36445 6.09441 3.91059 5.78107 3.08256 1.71384 3.15030 2.86853 3.80771 3.88608 6.10212 13 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00083 7.49144 8.21379 0.61958 0.77255 0.48576 0.95510 14 6.78355 7.85546 8.86857 8.34424 2.84677 8.52583 8.89846 1.60727 8.31715 0.49422 5.64180 8.73667 8.22802 7.93791 8.17291 8.06898 6.97713 2.10011 8.43262 7.61568 14 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00083 7.49144 8.21379 0.61958 0.77255 0.48576 0.95510 15 3.39540 3.71085 1.12666 1.64802 6.45907 5.37123 5.55852 5.94606 2.62678 5.41847 6.15296 2.56275 5.76502 2.65657 2.61621 3.44250 2.63579 5.50401 7.54441 6.13255 15 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00083 7.49144 8.21379 0.61958 0.77255 0.48576 0.95510 16 2.79147 7.11047 2.71656 1.00671 6.45691 5.36990 3.17840 5.94384 1.90323 3.79507 3.87725 3.62148 5.76340 2.81052 2.38985 3.13241 4.82777 3.59231 7.54233 6.13056 16 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00083 7.49144 8.21379 0.61958 0.77255 0.48576 0.95510 17 3.74793 6.51379 3.88478 3.45323 5.66808 5.62560 3.87219 2.39039 2.47987 0.89619 2.18546 5.29731 6.00799 3.60934 2.73893 4.85767 3.74168 3.60746 7.08083 3.20961 17 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00083 7.49144 8.21379 0.61958 0.77255 0.48576 0.95510 18 0.65513 2.82913 3.97283 5.00104 5.61629 5.68062 5.94590 2.86372 2.85887 4.68829 5.57687 5.41344 6.06825 5.26345 2.58820 2.79938 3.64399 2.51307 7.05332 5.81498 18 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00083 7.49144 8.21379 0.61958 0.77255 0.48576 0.95510 19 2.13762 3.83992 3.17475 1.74461 6.45680 3.10871 3.62992 3.20576 1.61219 3.92861 6.15073 3.18354 5.76349 2.79159 1.72398 4.55841 4.82784 5.50176 7.54230 6.13057 19 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00083 7.49144 8.21379 0.61958 0.77255 0.48576 0.95510 20 2.16728 7.10956 2.27281 1.80405 6.45559 3.64303 5.55706 5.94224 1.64488 3.68381 3.31259 4.83722 5.76359 3.18656 1.81492 3.06223 3.68421 3.78208 4.12651 6.13015 20 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00083 7.49144 8.21379 0.61958 0.77255 0.48576 0.95510 21 2.75162 3.21132 4.85665 2.47903 6.42308 2.58334 5.56438 5.90252 3.49081 2.16183 3.00124 3.09486 5.76960 3.10999 2.00466 2.31700 2.34736 5.47296 7.52566 2.31660 21 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00083 7.49144 8.21379 0.61958 0.77255 0.48576 0.95510 22 4.62120 7.13476 2.72957 2.72194 6.48116 0.65323 3.58463 3.26578 3.07426 5.43989 6.17569 2.52251 5.78443 3.50442 2.77991 4.58209 4.85251 3.82633 7.56558 6.15410 22 - T 2.68697 4.42304 2.77599 2.73202 3.45772 2.40592 3.72574 3.29433 2.67820 2.69434 4.24769 2.90426 2.73819 3.18225 2.89880 2.37966 2.77599 2.98597 4.58556 3.59433 0.17404 1.83590 8.21379 0.01635 4.12171 0.48576 0.95510 23 3.25797 6.48674 3.81839 4.89841 3.87321 5.64330 5.88615 2.40265 2.58414 1.78492 2.21126 3.87499 2.87209 3.08969 2.09641 2.74594 3.47004 2.16057 7.05851 5.81026 24 - C 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00083 7.49144 8.21379 0.61958 0.77255 0.48576 0.95510 24 5.64141 8.06663 3.43284 5.02689 7.81328 3.23477 6.70520 7.36975 3.75779 6.83813 7.66045 2.56972 2.49845 5.87363 6.36473 0.52907 1.99138 6.79875 8.97231 7.46336 25 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00083 7.49144 8.21379 0.61958 0.77255 0.48576 0.95510 25 3.37440 6.81288 5.05711 3.50892 6.04397 5.47637 5.68097 3.11168 1.47794 3.06451 3.99138 5.01428 5.86555 2.87768 1.11969 3.05050 3.71647 2.17439 7.32018 5.99175 26 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00083 7.49144 8.21379 0.61958 0.77255 0.48576 0.95510 26 3.03979 7.21634 4.87443 3.29729 6.58007 2.76186 3.17599 6.06918 3.47741 5.54239 6.28153 2.99011 3.60937 4.77175 4.91721 0.45660 3.54310 5.62338 7.66957 6.25399 27 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00083 7.49144 8.21379 0.61958 0.77255 0.48576 0.95510 27 2.01285 7.10858 2.15783 1.21327 6.45383 2.57355 5.55813 5.93995 3.47057 5.41394 6.14921 4.83835 5.76453 2.46398 4.78569 2.96113 3.57753 3.56997 2.58731 3.14251 28 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00083 7.49144 8.21379 0.61958 0.77255 0.48576 0.95510 28 2.04343 6.19690 6.80642 6.19046 2.14404 6.00010 3.63111 1.84554 5.97257 1.27880 2.66583 6.16765 6.35987 6.09716 5.97410 5.31281 5.05854 2.09550 6.81536 2.70797 29 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00083 7.49144 8.21379 0.61958 0.77255 0.48576 0.95510 29 3.21843 6.87555 7.66361 7.10867 3.06098 6.98607 7.43870 0.92335 6.95646 1.68333 2.55617 7.15640 7.26168 7.08879 6.99486 6.34497 3.84748 1.51503 7.81467 6.65725 30 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00083 7.49144 8.21379 0.61958 0.77255 0.48576 0.95510 30 2.79690 7.10817 4.84900 2.22179 6.45286 3.82058 3.73805 3.67688 2.67032 3.57190 6.14904 3.67441 5.76666 4.65651 0.69284 2.53233 3.67103 5.49863 7.54087 6.13073 31 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00083 7.49144 8.21379 0.61958 0.77255 0.48576 0.95510 31 2.21122 3.24886 2.57690 1.73566 3.93490 5.42545 5.62231 2.85973 3.34993 2.59872 4.12018 3.13570 5.81676 2.45814 2.27664 3.64803 4.84879 2.63358 7.41070 3.04074 32 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00083 7.49144 8.21379 0.61958 0.77255 0.48576 0.95510 32 0.55351 6.26609 6.88172 6.26802 5.32252 6.07911 6.41803 2.96467 6.05268 1.62951 3.15153 6.24867 6.43442 6.17383 6.05429 3.04742 5.13211 3.55047 6.89225 3.58902 33 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00083 7.49144 8.21379 0.61958 0.77255 0.48576 0.95510 33 2.10585 6.87290 7.67588 7.12970 3.57301 3.68451 7.48400 1.23645 6.98416 1.04589 5.89550 7.17792 7.28653 7.13451 7.03345 6.36823 5.85162 1.78728 7.87253 6.70117 34 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00083 7.49144 8.21379 0.61958 0.77255 0.48576 0.95510 34 2.38999 7.10990 3.71312 1.89094 6.45609 3.53874 4.01788 3.22159 2.50582 1.97132 3.92039 2.92014 5.76350 3.61323 1.58416 2.54618 3.55145 5.50114 7.54192 6.13029 35 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00083 7.49144 8.21379 0.61958 0.77255 0.48576 0.95510 35 2.74777 7.11034 3.04846 1.62948 3.42154 2.70662 3.12184 5.94365 2.11406 2.91904 3.84569 2.42135 5.76338 2.04579 3.28778 3.64417 3.62325 5.50169 7.54223 3.39872 36 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00083 7.49144 8.21379 0.61958 0.77255 0.48576 0.95510 36 2.90649 6.87085 5.00042 2.37471 2.81819 3.86700 3.60819 5.54594 2.24714 2.03335 5.93774 4.96769 5.83830 3.64541 2.72324 3.48807 4.85725 3.77160 2.77669 1.31525 37 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00083 7.49144 8.21379 0.61958 0.77255 0.48576 0.95510 37 2.16204 6.25103 6.15053 3.24608 5.35684 5.84566 3.99396 2.40823 2.45628 1.15159 5.36505 5.79949 6.21605 5.68544 2.45495 3.59869 4.98697 2.09613 6.85998 2.70464 38 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00083 7.49144 8.21379 0.61958 0.77255 0.48576 0.95510 38 2.55249 7.10353 2.12564 1.47768 6.44673 2.97138 5.55902 2.56850 2.21136 2.96180 6.14468 3.09471 5.76520 4.65595 2.69704 3.62646 2.72447 3.25078 7.53733 3.90092 39 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00083 7.49144 8.21379 0.61958 0.77255 0.48576 0.95510 39 3.09564 7.10954 3.44404 2.14572 6.45556 4.07622 5.55707 3.95519 2.05066 2.77917 3.77203 2.52128 5.76360 1.80902 1.62456 4.55855 2.93502 5.50069 7.54166 3.29192 40 - C 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00056 7.49117 * 0.61958 0.77255 0.00000 * //