HMMER3/b [3.0 | March 2010] NAME LRRCT ACC PF01463.19 DESC Leucine rich repeat C-terminal domain LENG 25 ALPH amino RF no CS yes MAP yes DATE Sat Oct 6 04:34:11 2012 NSEQ 59 EFFN 59.000000 CKSUM 2061060512 GA 20.00 4.20; TC 20.00 4.20; NC 19.90 4.10; BM hmmbuild HMM.ann SEED.ann SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq STATS LOCAL MSV -7.2638 0.74326 STATS LOCAL VITERBI -7.5395 0.74326 STATS LOCAL FORWARD -3.0968 0.74326 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 2.61245 2.53289 2.92037 2.93871 3.50336 2.92850 3.65599 3.46420 3.10727 2.28556 3.74907 3.23829 2.41091 3.08237 2.78687 2.62128 3.25813 2.95514 5.29934 3.68817 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00069 7.67431 8.39666 0.61958 0.77255 0.00000 * 1 2.36837 7.27555 1.94372 2.37706 2.57392 3.02111 3.52660 3.27554 3.62818 3.68537 6.31586 2.04595 3.42344 2.85052 2.86377 2.08258 4.07744 5.66690 7.70745 6.29569 1 - G 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00069 7.67431 8.39666 0.61958 0.77255 0.48576 0.95510 2 1.90074 6.33338 6.94131 6.32507 3.82715 6.13343 6.46812 2.36557 6.10663 1.52684 2.74661 6.30104 2.12309 6.23450 6.10918 5.44559 2.25956 1.94675 6.95638 2.73423 2 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00069 7.67431 8.39666 0.61958 0.77255 0.48576 0.95510 3 3.85077 6.45503 6.16149 3.08800 3.26876 5.97564 3.00501 3.26740 3.16269 2.07766 3.29965 5.87054 6.34835 2.16171 1.46610 5.24778 2.43872 2.81244 7.05886 2.37709 3 - B 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00069 7.67431 8.39666 0.61958 0.77255 0.48576 0.95510 4 8.92255 0.00181 9.06207 9.15467 9.67490 8.09159 9.66150 10.09759 9.33865 9.14321 10.49773 9.45590 8.73479 9.64677 9.07380 9.31295 9.34839 9.69530 9.95539 9.92239 4 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00069 7.67431 8.39666 0.61958 0.77255 0.48576 0.95510 5 1.40099 7.10694 2.91888 2.56080 3.76896 4.23749 4.01299 3.93360 4.55410 3.02905 2.83078 3.88181 5.97936 2.75527 2.43039 2.58132 2.79212 2.31717 4.11547 6.21895 5 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00069 7.67431 8.39666 0.61958 0.77255 0.48576 0.95510 6 2.88559 7.27388 3.00444 2.73209 4.12465 1.78123 2.71043 6.10583 3.35805 3.45315 3.01819 1.88018 5.92905 3.46987 4.94995 1.79384 3.10369 5.66481 7.70625 2.96404 6 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00069 7.67431 8.39666 0.61958 0.77255 0.48576 0.95510 7 2.95321 7.76532 3.22725 3.76226 7.09642 2.75875 6.23178 6.57901 5.07737 3.44115 6.86713 5.36319 0.39090 3.00936 5.60128 3.88216 5.54907 6.16038 4.14799 6.81846 7 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00069 7.67431 8.39666 0.61958 0.77255 0.48576 0.95510 8 2.85584 7.27545 2.10106 1.58529 3.70757 3.20904 2.87667 4.37752 2.86282 5.58127 6.31578 3.39390 1.61473 4.81804 3.42452 2.12337 4.99300 4.12184 7.70738 6.29567 8 - G 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.03767 7.67431 3.31026 0.61958 0.77255 0.48576 0.95510 9 2.00333 7.24095 3.37761 2.53410 3.17360 3.36264 2.80294 6.07346 2.66827 3.01561 3.03982 2.85542 2.58894 3.28660 2.57267 2.14450 3.63285 3.47575 3.79357 6.26165 9 - G 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.03299 7.63736 3.44293 0.61958 0.77255 0.55373 0.85520 10 2.74242 3.84920 6.86102 6.24630 2.50846 6.07481 4.22338 3.82194 3.08984 1.05657 2.59710 6.23424 3.42989 3.68961 2.58401 3.80062 5.13868 2.22432 6.90434 2.97082 10 - G 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.08378 7.62617 2.52721 0.61958 0.77255 1.55803 0.23642 11 2.19983 7.15577 4.89148 2.94100 6.50163 5.41687 3.31897 3.64096 1.98438 5.46136 6.19624 3.25919 5.81035 2.11620 1.22077 2.91395 2.93464 3.68686 7.58796 3.64628 11 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.06546 7.54318 2.76732 0.61958 0.77255 2.28182 0.10769 12 3.09966 7.09785 2.76763 3.18098 6.44270 0.67028 3.52303 2.69684 4.28324 3.71839 6.13862 3.16638 3.69783 3.55337 2.86322 3.44681 4.81869 5.48838 7.53063 6.11967 12 - T 2.68895 4.42502 2.77574 2.73250 3.46062 2.40696 3.72446 3.29349 2.67783 2.69014 4.23659 2.90623 2.74016 3.17049 2.89521 2.38163 2.77387 2.98433 4.58754 3.61780 0.82986 0.57338 8.20091 0.00477 5.34846 0.04764 3.06776 13 3.67238 7.26007 5.02449 3.58935 6.59803 5.54448 5.73143 3.66853 2.27325 3.07310 6.30276 3.46069 1.15472 2.43297 1.76106 2.31776 4.99917 3.19808 7.69662 6.29103 14 - B 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00069 7.67431 8.39666 0.61958 0.77255 0.48576 0.95510 14 3.17443 3.99804 6.93170 6.31522 3.78390 6.12332 4.08092 2.33611 4.41692 1.01233 3.38835 6.29085 3.67548 6.22472 6.09910 3.65069 3.49105 1.41501 6.94690 2.85464 15 - G 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00069 7.67431 8.39666 0.61958 0.77255 0.48576 0.95510 15 2.15361 6.52870 5.91873 3.93828 2.77363 3.18395 4.05918 3.08960 2.83059 1.28311 5.63616 5.70880 6.28424 3.43245 1.87170 2.89666 5.12305 3.72794 3.46431 3.07714 16 - G 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00069 7.67431 8.39666 0.61958 0.77255 0.48576 0.95510 16 2.92494 7.27571 1.92078 2.14921 6.62217 4.31819 2.79793 6.10913 3.63787 2.24219 6.31600 3.02571 2.56322 2.46559 2.73264 2.22455 2.68863 4.10750 7.70756 6.29576 17 - G 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00069 7.67431 8.39666 0.61958 0.77255 0.48576 0.95510 17 3.44412 6.32537 2.63736 4.05204 2.80309 6.12298 6.45717 2.52081 6.09422 1.39397 2.65464 6.28945 6.48656 6.22305 6.09797 3.29421 2.89247 1.91143 6.94733 1.81451 18 - C 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00069 7.67431 8.39666 0.61958 0.77255 0.48576 0.95510 18 2.92425 7.27348 3.34968 3.71073 6.61889 5.53571 3.05385 6.10509 3.68761 1.60824 6.31405 2.26668 2.00877 2.64251 3.39353 2.87776 2.28475 2.28927 7.70596 6.29481 19 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.32079 7.67431 1.29476 0.61958 0.77255 0.48576 0.95510 19 2.27797 6.98540 2.15935 3.35993 2.75953 2.91637 2.68624 3.62059 3.11155 3.04999 2.80947 3.53476 1.98679 3.36669 3.15425 2.48250 3.05197 5.37594 7.41820 6.00735 20 - T 2.68613 4.42603 2.76740 2.72875 3.46732 2.40890 3.72872 3.29322 2.68118 2.68936 4.25067 2.90724 2.74117 3.16581 2.89818 2.37950 2.77751 2.98623 4.58855 3.61283 0.65989 0.92240 2.45893 0.78406 0.60982 2.98671 0.05177 20 2.34576 6.91064 2.90770 2.41868 6.25706 3.01977 3.69785 5.74398 2.05798 2.68565 3.07498 3.38008 3.61998 1.84184 4.58424 1.65456 4.62798 5.30200 7.34252 5.93075 25 - C 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00104 7.26540 7.98775 0.61958 0.77255 0.17132 1.84865 21 4.71899 7.22013 1.74141 2.25991 4.07325 3.09499 5.68172 2.91193 2.77769 2.61974 3.38742 2.06353 4.07420 3.86815 3.06071 2.51773 2.79136 2.72292 7.65522 6.24669 26 - C 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00072 7.62587 8.34822 0.61958 0.77255 0.14059 2.03135 22 2.48047 7.26752 2.76592 2.89684 1.69188 2.50609 3.96183 3.43867 2.62733 2.00753 4.09494 3.54122 2.56675 3.72172 3.81678 2.79248 3.66659 5.65684 7.70167 4.22619 27 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00069 7.67431 8.39666 0.61958 0.77255 0.48576 0.95510 23 2.42206 7.27524 2.74165 3.07281 6.62149 2.55562 4.02541 2.58280 2.79753 5.58103 6.31559 3.05365 3.28078 2.58754 3.31167 1.76592 2.68163 2.35775 4.00226 4.41854 28 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00069 7.67431 8.39666 0.61958 0.77255 0.48576 0.95510 24 5.58634 0.07593 8.19271 8.26215 8.45799 6.28171 8.59684 8.04723 8.09943 7.71893 8.43849 7.28511 3.46507 8.10762 7.95692 3.52295 6.19357 6.99875 9.70786 8.82699 29 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00069 7.67431 8.39666 0.61958 0.77255 0.48576 0.95510 25 2.15837 7.27570 2.30191 2.39071 6.62217 2.44001 4.17830 6.10912 2.47575 2.75152 6.31600 3.95317 1.67567 2.90859 3.23636 2.43659 3.83412 3.69778 7.70755 6.29576 30 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00046 7.67409 * 0.61958 0.77255 0.00000 * //