HMMER3/b [3.0 | March 2010] NAME Bacteriocin_II ACC PF01721.13 DESC Class II bacteriocin LENG 36 ALPH amino RF no CS yes MAP yes DATE Sat Oct 6 02:37:24 2012 NSEQ 19 EFFN 4.003174 CKSUM 433428977 GA 21.10 21.10; TC 22.20 25.30; NC 21.00 21.00; BM hmmbuild HMM.ann SEED.ann SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq STATS LOCAL MSV -7.5240 0.71964 STATS LOCAL VITERBI -7.9079 0.71964 STATS LOCAL FORWARD -4.4309 0.71964 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 2.53278 2.81497 3.32496 3.17382 4.02293 2.09500 3.88737 2.95777 2.63150 3.38765 4.33942 2.41255 4.50408 3.37034 3.47617 2.66371 3.03493 2.53614 3.39245 2.91670 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00857 5.15930 5.88164 0.61958 0.77255 0.00000 * 1 3.14450 5.29047 3.60010 2.99968 4.56404 3.94909 4.07840 2.93986 1.12184 3.53432 4.36850 3.48692 4.32706 3.22928 2.09049 3.18344 2.45766 2.82991 5.75702 4.46994 1 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00857 5.15930 5.88164 0.61958 0.77255 0.48576 0.95510 2 3.43884 5.36912 3.77383 3.52424 3.72278 4.10369 4.45130 4.30705 3.67995 3.85841 4.80994 2.37285 4.67901 3.97213 4.05165 1.57130 3.78286 3.98102 5.29566 0.92238 2 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00857 5.15930 5.88164 0.61958 0.77255 0.48576 0.95510 3 5.37197 6.36445 5.84996 5.86126 3.31263 5.42150 4.85429 5.32391 5.74713 4.45597 5.85933 5.52201 5.90809 5.71026 5.63638 5.35160 5.67771 5.24733 4.96049 0.12475 3 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00857 5.15930 5.88164 0.61958 0.77255 0.48576 0.95510 4 4.11358 6.12105 2.54551 3.75297 6.20339 0.23935 5.44160 5.95285 4.71883 5.44019 6.38964 4.25626 5.09097 4.72578 5.24280 4.14567 4.58214 5.31042 7.18888 6.07632 4 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00857 5.15930 5.88164 0.61958 0.77255 0.48576 0.95510 5 4.48999 6.24411 4.36189 4.40946 5.90215 4.66235 5.78928 6.07532 4.94503 5.53453 6.59331 0.11479 5.39064 5.20124 5.22731 4.58341 4.96324 5.53265 6.95726 5.86472 5 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00857 5.15930 5.88164 0.61958 0.77255 0.48576 0.95510 6 4.79951 6.29083 5.65141 5.71434 6.57450 0.05503 6.57546 6.61345 6.00665 6.00450 7.09180 5.82324 5.67270 6.24562 5.97482 5.02394 5.34279 5.94260 7.21904 6.75919 6 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00857 5.15930 5.88164 0.61958 0.77255 0.48576 0.95510 7 3.99454 5.16705 6.12844 5.67602 4.43192 5.67779 6.45977 1.92726 5.63518 2.10388 4.14270 5.84813 5.84495 5.85168 5.78738 5.13545 4.25242 0.46353 6.65075 5.46558 7 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00857 5.15930 5.88164 0.61958 0.77255 0.48576 0.95510 8 3.03688 5.11470 3.47340 2.94592 4.19195 3.86830 2.26237 3.74427 2.91329 3.36967 4.21413 3.44176 4.27028 2.87439 3.34083 2.00995 2.54482 3.44986 5.54513 1.56442 8 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00857 5.15930 5.88164 0.61958 0.77255 0.48576 0.95510 9 4.73527 0.06403 6.12598 6.16047 6.21530 4.94207 6.62443 5.87927 6.13538 5.54711 6.73349 6.01531 5.68016 6.41873 6.00455 5.00023 5.27941 5.46036 7.10869 6.45138 9 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00857 5.15930 5.88164 0.61958 0.77255 0.48576 0.95510 10 3.06042 5.14425 3.75646 3.46071 5.28196 1.89783 4.73799 4.76225 3.63786 4.34363 5.11593 1.01750 4.43502 3.91836 4.06618 2.12840 2.09694 4.14881 6.51020 5.21192 10 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00857 5.15930 5.88164 0.61958 0.77255 0.48576 0.95510 11 3.27762 5.79047 2.61946 2.76688 5.15214 3.85402 4.16815 4.64164 0.85244 4.10797 4.88202 2.35018 4.34172 3.28883 3.41199 2.43191 3.52567 4.20261 6.23094 4.80849 11 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00857 5.15930 5.88164 0.61958 0.77255 0.48576 0.95510 12 2.95846 5.47144 2.79448 2.13674 4.81655 3.72392 2.41729 4.30316 1.59936 3.77642 4.51270 2.82803 4.12131 2.61065 3.14566 2.31613 2.68242 3.86222 5.90327 4.49116 12 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00857 5.15930 5.88164 0.61958 0.77255 0.48576 0.95510 13 3.09294 5.33668 3.52937 3.05462 5.02353 1.93025 4.26429 4.47768 1.05322 3.99752 4.77191 3.52600 4.33091 3.39372 3.35588 2.16059 2.72183 4.00625 6.13802 4.80481 13 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00857 5.15930 5.88164 0.61958 0.77255 0.48576 0.95510 14 4.73527 0.06403 6.12598 6.16047 6.21530 4.94207 6.62443 5.87927 6.13538 5.54711 6.73349 6.01531 5.68016 6.41873 6.00455 5.00023 5.27941 5.46036 7.10869 6.45138 14 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00857 5.15930 5.88164 0.61958 0.77255 0.48576 0.95510 15 3.15157 4.80367 4.22704 3.69611 3.55763 4.09856 4.35240 3.37705 3.60295 3.06981 3.99650 3.98907 4.53730 3.89254 3.88863 1.54234 2.26147 3.15213 1.44076 2.85168 15 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00857 5.15930 5.88164 0.61958 0.77255 0.48576 0.95510 16 4.09085 5.45078 5.83899 5.65236 4.92214 5.04302 6.37289 2.83100 5.59203 3.46933 4.79982 5.65767 5.62513 5.91075 5.68506 4.74780 4.47180 0.20205 6.81227 5.62494 16 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00857 5.15930 5.88164 0.61958 0.77255 0.48576 0.95510 17 4.00631 6.71297 0.92811 2.88581 6.03582 4.01795 4.74718 5.71939 3.99620 5.14392 6.09392 0.94330 4.74009 3.94871 4.74844 3.82357 4.35345 5.20460 7.22490 5.59815 17 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00857 5.15930 5.88164 0.61958 0.77255 0.48576 0.95510 18 4.07849 5.88976 4.84698 3.97977 4.75479 4.63578 4.42492 4.65565 2.12655 4.08894 5.04129 4.24266 4.97782 3.64478 2.34618 4.12534 4.20672 4.40968 0.55357 4.57856 18 - C 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00857 5.15930 5.88164 0.61958 0.77255 0.48576 0.95510 19 2.01851 5.03541 4.14631 3.98814 5.53681 0.63402 5.20531 5.03080 4.26035 4.66051 5.42891 2.43616 4.52499 4.46079 4.59667 2.46141 3.57753 4.27149 6.82296 5.62020 19 - C 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00857 5.15930 5.88164 0.61958 0.77255 0.48576 0.95510 20 2.96577 5.46187 3.21623 1.69769 4.80638 3.73675 3.91855 4.28652 2.11890 3.76342 4.50412 3.20587 4.12985 1.73265 2.67807 2.65681 2.57986 3.85253 5.89158 3.54407 20 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00857 5.15930 5.88164 0.61958 0.77255 0.48576 0.95510 21 0.31262 5.08634 4.29452 4.24335 5.54331 3.80168 5.41413 5.03347 4.52214 4.74272 5.56227 2.68625 4.62712 4.73873 4.76530 3.33018 3.69505 4.31333 6.86883 5.68412 21 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00857 5.15930 5.88164 0.61958 0.77255 0.48576 0.95510 22 2.61892 4.88614 3.58534 3.02302 2.42418 3.86957 4.09612 2.48746 2.07640 3.11411 3.97742 2.97207 4.25414 2.88936 2.83477 3.09264 2.10267 3.18044 3.19141 4.16444 22 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00857 5.15930 5.88164 0.61958 0.77255 0.48576 0.95510 23 2.57723 5.41552 3.21848 2.37177 4.77670 2.33779 3.96779 4.24855 2.71998 3.75209 4.50532 3.23748 4.15279 1.92116 3.20841 1.83917 2.19534 3.82635 5.90257 4.50584 23 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00857 5.15930 5.88164 0.61958 0.77255 0.48576 0.95510 24 2.29429 2.16244 3.28192 1.99277 4.55451 3.75549 3.95578 3.37604 2.72604 3.55413 4.33875 2.33348 4.14902 2.72137 3.20320 2.33889 2.84315 3.63081 5.75553 4.39106 24 - C 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00857 5.15930 5.88164 0.61958 0.77255 0.48576 0.95510 25 3.07177 4.75978 4.24018 3.74502 4.07647 2.32669 4.53873 0.86331 3.53347 3.14348 4.05486 4.00870 4.49385 3.92543 2.79926 2.72989 3.38311 3.12209 5.53116 4.32557 25 - C 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.05033 5.15930 3.13874 0.61958 0.77255 0.48576 0.95510 26 1.92079 4.43434 4.54616 3.95889 3.54814 2.07579 4.42379 1.87593 3.82432 2.63326 3.56017 4.12330 4.46858 4.02945 3.97386 3.38804 2.60772 1.97292 5.06521 2.93135 26 - C 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00894 5.11791 5.84025 0.61958 0.77255 0.61158 0.78196 27 2.97458 5.47903 2.67061 2.63670 4.81894 1.95265 3.19212 4.30365 2.17210 3.78316 4.52598 1.79645 4.12828 3.03094 3.17436 2.58117 2.66768 3.86793 5.91597 4.50308 27 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00894 5.11791 5.84025 0.61958 0.77255 0.41443 1.08092 28 2.52974 5.24664 2.88520 2.74101 4.51290 3.13384 2.85193 2.00194 2.73694 3.51758 3.45547 2.12579 4.15426 3.09185 2.25976 2.96143 3.18331 3.59423 5.72974 4.37253 28 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00857 5.15930 5.88164 0.61958 0.77255 0.48576 0.95510 29 2.68576 4.42008 4.73871 4.14018 3.52250 2.36827 4.47845 2.20993 3.97507 1.94943 2.94370 4.23523 4.51800 4.15071 4.06699 2.19683 3.23999 1.60362 5.04918 3.86678 29 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00857 5.15930 5.88164 0.61958 0.77255 0.48576 0.95510 30 1.42328 4.99050 5.76885 5.29126 4.42358 5.16664 5.91689 1.15022 5.20604 2.98702 4.20731 5.38526 5.49863 5.44837 5.35030 4.57908 4.00064 1.26420 6.36019 5.13900 30 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00857 5.15930 5.88164 0.61958 0.77255 0.48576 0.95510 31 2.29021 5.21251 3.31938 2.76295 4.47429 2.66215 3.97389 3.23933 2.42898 3.48481 3.06286 1.78659 4.16208 3.11111 3.22873 2.14801 2.80115 3.55900 5.70825 4.35896 31 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00857 5.15930 5.88164 0.61958 0.77255 0.48576 0.95510 32 2.00092 5.02761 3.77160 3.32160 3.22038 1.11238 4.47808 4.13840 3.36428 3.77531 4.59576 2.11445 4.35672 3.67729 3.78498 2.47511 3.36651 3.72451 6.02369 4.73696 32 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00857 5.15930 5.88164 0.61958 0.77255 0.48576 0.95510 33 3.45736 4.88775 4.81890 4.28909 2.18548 1.88676 4.32987 3.36405 4.15584 2.63726 4.01092 4.38220 4.84145 3.19692 4.30405 3.78774 3.68607 3.18245 1.27898 2.52895 33 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00857 5.15930 5.88164 0.61958 0.77255 0.48576 0.95510 34 1.49122 4.64322 3.96738 3.40146 3.78062 3.97898 2.54521 3.13050 3.34186 2.13622 3.75903 3.08958 4.36450 3.63390 3.66561 3.23746 2.70704 2.01667 5.24279 4.01958 34 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00857 5.15930 5.88164 0.61958 0.77255 0.48576 0.95510 35 3.02802 5.34850 3.31821 2.86274 4.87947 1.80041 4.14571 4.34634 2.92758 3.87450 4.64109 2.43356 4.24263 2.69505 3.40593 1.62681 1.99117 3.90154 6.03855 4.66170 35 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00857 5.15930 5.88164 0.61958 0.77255 0.48576 0.95510 36 2.97908 5.09138 3.43235 2.88383 3.35654 1.30483 2.76556 3.73038 2.30002 3.35689 4.18752 3.38746 4.21784 3.21640 3.30136 2.55364 3.21535 2.97817 5.61712 4.29925 36 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00578 5.15650 * 0.61958 0.77255 0.00000 * //