HMMER3/b [3.0 | March 2010] NAME PsbJ ACC PF01788.12 DESC PsbJ LENG 40 ALPH amino RF no CS no MAP yes DATE Thu Oct 4 05:09:33 2012 NSEQ 25 EFFN 2.249146 CKSUM 1565321760 GA 21.20 21.20; TC 21.20 21.20; NC 20.80 20.80; BM hmmbuild HMM.ann SEED.ann SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq STATS LOCAL MSV -7.6464 0.71949 STATS LOCAL VITERBI -7.9146 0.71949 STATS LOCAL FORWARD -4.4171 0.71949 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 2.59599 4.79708 4.13846 3.68565 3.05580 1.89808 4.29968 2.51158 3.64288 2.14206 3.60151 3.86322 3.29199 3.95570 3.48644 2.52720 2.90170 2.30237 3.62824 3.11707 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01348 4.70906 5.43141 0.61958 0.77255 0.00000 * 1 2.79937 4.40469 3.93234 3.36139 3.13849 3.81668 4.12095 2.87320 3.23597 2.59072 1.33530 3.68231 4.20908 3.54493 2.89910 2.84260 2.56971 2.66937 5.01207 3.79732 1 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01348 4.70906 5.43141 0.61958 0.77255 0.48576 0.95510 2 1.99033 4.84183 3.25493 2.54365 3.62648 3.62888 3.84321 3.12950 2.68238 3.08641 3.50949 2.97955 4.01718 3.02499 2.72909 1.94596 2.45300 3.15585 5.36949 4.06305 2 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01348 4.70906 5.43141 0.61958 0.77255 0.48576 0.95510 3 2.52092 5.24424 2.58250 2.26061 4.56291 2.90410 3.76640 4.03200 2.52508 3.54032 4.29808 1.80140 3.96169 2.87527 3.01699 2.27643 3.03127 3.62195 3.68729 4.29857 3 - - 2.68627 4.42234 2.77529 2.73132 3.46363 2.40470 3.72504 3.29363 2.67750 2.69364 4.24699 2.90356 2.73749 3.18156 2.89810 2.37896 2.77479 2.98496 4.58486 3.61512 0.57826 1.82878 1.27828 0.67532 0.71129 0.48576 0.95510 4 2.64218 4.60227 3.27141 2.59269 4.08503 2.99302 4.00119 3.40533 2.88552 3.12703 3.99268 3.27627 3.96920 3.22812 3.27519 2.77465 1.23697 2.76573 5.44218 4.17156 6 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01862 4.38866 5.11101 0.61958 0.77255 0.27952 1.41118 5 2.78212 5.05633 3.10868 2.23156 4.35458 2.87896 3.81370 3.78726 2.59846 3.36238 4.15776 3.10908 3.53712 2.76214 3.07006 2.52571 1.55346 3.03685 5.57721 4.22290 7 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01348 4.70906 5.43141 0.61958 0.77255 0.48576 0.95510 6 2.49799 4.78859 4.13940 4.11261 5.30374 0.38751 5.21967 4.79346 4.37632 4.50124 5.34461 4.10230 4.34374 4.58280 4.56862 3.07363 3.43974 4.06001 6.55709 5.48254 8 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01348 4.70906 5.43141 0.61958 0.77255 0.48576 0.95510 7 3.48865 5.54181 4.04905 3.30299 5.10842 4.08732 4.00882 4.40632 2.03800 3.83137 4.71158 3.65737 4.45917 3.14361 0.70323 3.49675 2.76563 4.08598 5.85454 4.73357 9 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01348 4.70906 5.43141 0.61958 0.77255 0.48576 0.95510 8 3.42477 4.68809 5.36384 4.84321 3.93808 4.86320 5.40971 0.82032 4.73614 2.14699 3.74384 4.98528 5.13856 4.95026 4.87101 4.24042 2.73380 1.58368 5.84611 4.65717 10 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01348 4.70906 5.43141 0.61958 0.77255 0.48576 0.95510 9 4.19378 5.72766 4.88295 4.87398 5.69646 4.37358 5.80414 5.55884 5.02042 5.03720 6.16367 5.07693 0.12828 5.37090 5.10208 4.40060 4.69993 5.08846 6.56537 5.84739 11 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01348 4.70906 5.43141 0.61958 0.77255 0.48576 0.95510 10 3.51115 5.03141 4.71754 4.35718 3.70432 4.37854 5.02490 2.99380 4.17213 0.49788 3.61262 4.57340 2.84485 4.47544 4.32745 3.88080 3.82842 3.06431 5.58792 4.42738 12 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01348 4.70906 5.43141 0.61958 0.77255 0.48576 0.95510 11 4.99758 6.00849 5.50924 5.45200 3.97022 4.81648 5.25877 5.18461 5.24791 4.40303 5.75521 5.49325 5.40385 5.57679 5.20351 5.20048 5.35240 5.08174 0.13895 3.94293 13 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01348 4.70906 5.43141 0.61958 0.77255 0.48576 0.95510 12 3.71270 4.96942 5.65418 5.06158 2.67258 5.03389 5.34184 1.78992 4.90723 0.81702 2.45281 5.19042 5.16327 4.84313 4.87052 4.39465 3.92375 2.28497 5.48274 4.47627 14 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01348 4.70906 5.43141 0.61958 0.77255 0.48576 0.95510 13 3.60852 4.81609 5.66633 5.22376 4.19288 5.19843 6.01342 1.47268 5.16174 2.60636 3.92479 5.38280 5.44624 5.43573 5.34002 4.65033 3.87867 0.60123 6.33502 5.10114 15 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01348 4.70906 5.43141 0.61958 0.77255 0.48576 0.95510 14 1.30977 4.55729 4.04135 3.61414 4.36440 1.27004 4.55958 3.62410 3.57524 2.93719 4.30506 3.78012 4.16348 3.86710 3.88263 2.88987 3.12431 2.86384 5.78334 4.57181 16 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01348 4.70906 5.43141 0.61958 0.77255 0.48576 0.95510 15 2.99388 4.43308 4.51317 3.93530 3.05432 4.13879 4.47306 2.50545 3.81515 2.07360 3.07962 4.14118 4.48888 4.02547 3.98876 3.44036 1.25243 1.89505 5.10092 3.91941 17 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01348 4.70906 5.43141 0.61958 0.77255 0.48576 0.95510 16 2.56226 4.39900 4.89486 4.31763 2.91060 4.29664 4.68342 1.81252 4.16371 2.31402 3.51908 4.40553 4.63632 4.34325 4.25293 3.62101 2.64120 1.09479 5.20742 4.02063 18 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01348 4.70906 5.43141 0.61958 0.77255 0.48576 0.95510 17 1.54261 4.44685 4.08404 3.56008 3.81297 2.03590 4.35794 2.67953 3.49182 2.85361 3.77911 3.79772 4.22878 3.76214 3.77234 3.04194 2.84864 1.75055 5.30139 4.09457 19 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01348 4.70906 5.43141 0.61958 0.77255 0.48576 0.95510 18 3.99072 5.60845 4.81543 4.83768 5.82810 0.12838 5.82104 5.70675 5.11757 5.20976 6.24274 4.98346 5.00847 5.37799 5.19137 4.19551 4.52592 5.07895 6.63259 5.98114 20 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01348 4.70906 5.43141 0.61958 0.77255 0.48576 0.95510 19 2.86619 4.28895 4.51413 3.92418 3.37445 4.01168 4.34266 1.62698 3.77494 1.68893 2.83665 4.06422 4.37270 3.96782 3.89967 2.76162 2.15690 2.38434 4.93745 3.75673 21 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01348 4.70906 5.43141 0.61958 0.77255 0.48576 0.95510 20 1.52852 4.47674 3.87360 3.34787 3.80117 2.23023 4.22344 3.12582 3.29319 1.78473 3.76900 3.65168 3.60042 3.58293 3.60983 2.97820 3.05237 2.65446 5.25809 4.04004 22 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01348 4.70906 5.43141 0.61958 0.77255 0.48576 0.95510 21 1.29515 4.59405 4.75903 4.39956 4.24288 3.88185 5.11421 2.57955 4.30912 3.00785 4.12511 4.36396 4.54919 4.56225 4.48382 3.33449 3.38264 0.98527 5.93291 4.73749 23 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01348 4.70906 5.43141 0.61958 0.77255 0.48576 0.95510 22 3.23214 4.59890 4.95164 4.41347 3.58791 3.35264 4.87171 1.07271 4.24843 1.38393 3.47979 4.55066 4.78215 4.44797 4.36239 3.79338 3.48247 2.23583 5.36945 4.19969 24 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01348 4.70906 5.43141 0.61958 0.77255 0.48576 0.95510 23 2.33115 4.51506 3.76678 3.22899 2.99577 1.66951 4.16505 3.21827 3.18734 2.93347 3.81550 3.56915 4.12695 3.48461 3.53555 2.50826 2.00000 2.58286 5.28913 4.05883 25 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01348 4.70906 5.43141 0.61958 0.77255 0.48576 0.95510 24 3.03993 4.41427 4.80320 4.21906 3.47179 4.24532 4.60284 2.23625 4.06354 1.38666 3.07024 4.33259 4.58198 4.23630 4.16150 2.77847 3.27596 1.33541 5.12966 3.95994 26 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01348 4.70906 5.43141 0.61958 0.77255 0.48576 0.95510 25 3.67412 4.90530 5.63025 5.10311 3.70146 5.13187 5.61426 2.04016 4.98624 1.00609 3.46362 5.27117 5.30235 5.07129 5.05559 4.52830 3.91292 1.12622 5.82241 4.73835 27 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01348 4.70906 5.43141 0.61958 0.77255 0.48576 0.95510 26 2.06033 4.56651 4.02936 3.66601 4.56793 0.84056 4.65000 3.01758 3.67231 3.65788 4.50216 3.79176 4.14717 3.94765 3.97585 2.37213 3.13137 3.45549 5.94997 4.74828 28 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01348 4.70906 5.43141 0.61958 0.77255 0.48576 0.95510 27 3.75208 4.96103 5.74506 5.22119 3.69081 5.25236 5.73807 1.01714 5.11472 1.12379 3.43583 5.40031 5.37943 5.15955 5.16533 4.66109 3.98708 1.94399 5.87068 4.81615 29 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01348 4.70906 5.43141 0.61958 0.77255 0.48576 0.95510 28 3.39647 4.87251 4.71511 4.31631 0.70812 4.30072 4.19848 3.25385 4.17542 2.46552 3.94365 4.31291 4.75128 4.32725 4.29696 2.64431 3.69258 3.13586 4.48901 2.85494 30 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01348 4.70906 5.43141 0.61958 0.77255 0.48576 0.95510 29 3.61892 4.89751 5.42328 4.88202 0.89032 4.89074 5.00821 2.05193 4.73318 1.84763 3.35104 4.96502 5.09951 4.76249 4.76286 4.24873 3.84517 2.23095 5.22443 3.89090 31 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01348 4.70906 5.43141 0.61958 0.77255 0.48576 0.95510 30 4.63795 5.66105 5.38731 5.22666 2.00336 5.15351 2.57816 4.34199 5.02783 3.52362 4.86015 4.69095 5.42392 4.82799 4.94324 4.54566 4.83553 4.26677 3.96922 0.47269 32 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01348 4.70906 5.43141 0.61958 0.77255 0.48576 0.95510 31 3.99072 5.60845 4.81543 4.83768 5.82810 0.12838 5.82104 5.70675 5.11757 5.20976 6.24274 4.98346 5.00847 5.37799 5.19137 4.19551 4.52592 5.07895 6.63259 5.98114 33 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01348 4.70906 5.43141 0.61958 0.77255 0.48576 0.95510 32 1.49830 4.60453 3.99818 3.64716 4.90820 2.98811 4.70869 4.36384 3.68510 4.01031 4.79420 3.76796 2.71685 3.95454 4.01768 0.94622 3.13257 3.72040 6.21296 5.00943 34 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01348 4.70906 5.43141 0.61958 0.77255 0.48576 0.95510 33 4.46615 5.65573 4.94004 4.75651 2.39705 4.95107 2.58847 4.37017 4.51859 3.57333 4.88289 4.54574 5.29466 4.62821 4.57539 4.40245 4.68826 4.27066 4.06809 0.43288 35 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01348 4.70906 5.43141 0.61958 0.77255 0.48576 0.95510 34 2.27733 4.89197 3.22700 2.67417 4.13958 3.60677 3.49824 3.54605 2.66407 3.17048 3.99648 3.17927 3.13823 2.64065 3.11611 1.78160 2.63594 2.43240 5.43531 4.11761 36 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01348 4.70906 5.43141 0.61958 0.77255 0.48576 0.95510 35 3.99072 5.60845 4.81543 4.83768 5.82810 0.12838 5.82104 5.70675 5.11757 5.20976 6.24274 4.98346 5.00847 5.37799 5.19137 4.19551 4.52592 5.07895 6.63259 5.98114 37 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01348 4.70906 5.43141 0.61958 0.77255 0.48576 0.95510 36 3.10662 4.48644 4.83705 4.26347 3.50613 4.30697 4.68801 2.12518 4.11164 1.03890 3.42043 4.39475 4.64477 4.29064 4.22265 2.78472 3.34789 1.73262 5.21206 4.04719 38 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01348 4.70906 5.43141 0.61958 0.77255 0.48576 0.95510 37 3.99072 5.60845 4.81543 4.83768 5.82810 0.12838 5.82104 5.70675 5.11757 5.20976 6.24274 4.98346 5.00847 5.37799 5.19137 4.19551 4.52592 5.07895 6.63259 5.98114 39 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01348 4.70906 5.43141 0.61958 0.77255 0.48576 0.95510 38 2.12921 4.58811 4.20765 4.05884 5.09433 3.35526 5.05231 4.53980 4.14925 4.25857 5.06492 3.96786 4.18372 4.38076 4.36211 0.48467 3.20820 3.81789 6.43822 5.28110 40 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01348 4.70906 5.43141 0.61958 0.77255 0.48576 0.95510 39 2.12121 4.57420 4.16390 3.96512 5.11501 2.48639 4.98749 4.58745 4.07274 4.25733 5.03146 3.91576 4.15403 4.28814 4.32376 0.58247 3.17345 3.83091 6.43390 5.28487 41 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01348 4.70906 5.43141 0.61958 0.77255 0.48576 0.95510 40 3.14600 4.53484 4.82027 4.23596 3.41338 3.11655 4.66450 2.23972 4.08561 0.85528 2.99736 4.38978 4.64213 4.24485 4.19549 3.64245 3.37855 2.26889 5.16671 4.02782 42 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00909 4.70467 * 0.61958 0.77255 0.00000 * //