HMMER3/b [3.0 | March 2010] NAME RNA_POL_M_15KD ACC PF02150.11 DESC RNA polymerases M/15 Kd subunit LENG 35 ALPH amino RF no CS yes MAP yes DATE Sun Oct 7 04:07:04 2012 NSEQ 10 EFFN 5.473633 CKSUM 832820895 GA 25.20 25.20; TC 25.20 25.20; NC 25.10 25.10; BM hmmbuild HMM.ann SEED.ann SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq STATS LOCAL MSV -7.4063 0.71967 STATS LOCAL VITERBI -8.0612 0.71967 STATS LOCAL FORWARD -4.2599 0.71967 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 2.92043 2.20518 2.86355 2.43320 3.06335 3.12313 4.19090 3.30265 2.71792 2.62359 3.53735 2.75127 3.11656 3.15454 3.07773 2.75775 3.17706 3.28689 5.23179 3.32449 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00657 5.42467 6.14702 0.61958 0.77255 0.00000 * 1 4.35093 5.57918 6.34777 5.75241 2.46912 5.70463 6.00308 1.87459 5.59729 1.04908 1.43502 5.88599 5.77914 5.46631 5.51949 5.07985 4.55595 2.27220 6.05522 5.08532 1 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00657 5.42467 6.14702 0.61958 0.77255 0.48576 0.95510 2 3.17787 5.63325 3.45118 2.24944 4.98445 3.94199 4.09595 2.06168 1.86620 3.92383 4.67892 3.41514 4.32977 2.33917 1.81733 2.34407 3.40164 4.02862 6.04651 4.67174 2 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00657 5.42467 6.14702 0.61958 0.77255 0.48576 0.95510 3 5.72550 6.68959 6.39550 6.43138 0.08139 5.71286 5.43383 5.43304 6.39820 4.51530 5.97598 6.07915 6.23030 6.26742 6.19519 5.82174 6.06077 5.46867 5.52628 3.83918 3 - B 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00657 5.42467 6.14702 0.61958 0.77255 0.48576 0.95510 4 5.23163 0.03960 6.49681 6.55460 6.69068 5.32866 7.01674 6.51704 6.57814 6.08046 7.27916 6.45800 6.05557 6.85328 6.41113 5.50000 5.77529 6.05630 7.46006 6.91833 4 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00657 5.42467 6.14702 0.61958 0.77255 0.48576 0.95510 5 3.23472 5.47917 3.60463 3.04242 4.78646 4.01872 4.19630 4.20612 2.86502 2.43564 4.57273 3.54951 1.28424 2.15310 2.44286 2.33162 3.46404 3.86017 5.95883 4.63669 5 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00657 5.42467 6.14702 0.61958 0.77255 0.48576 0.95510 6 3.21249 5.74123 1.90098 1.62981 5.08138 3.90755 4.15086 4.57363 1.60696 4.04476 4.79041 3.37071 4.34005 3.25549 3.42250 2.32885 2.41211 4.13065 6.17307 4.74815 6 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00657 5.42467 6.14702 0.61958 0.77255 0.48576 0.95510 7 5.23163 0.03960 6.49681 6.55460 6.69068 5.32866 7.01674 6.51704 6.57814 6.08046 7.27916 6.45800 6.05557 6.85328 6.41113 5.50000 5.77529 6.05630 7.46006 6.91833 7 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00657 5.42467 6.14702 0.61958 0.77255 0.48576 0.95510 8 3.81646 6.12246 3.40080 3.30756 5.84977 1.09776 4.79668 5.35471 2.28806 4.81554 5.66072 1.06267 4.84039 3.96270 3.93190 3.78305 4.15558 4.85152 6.89232 5.52008 8 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00657 5.42467 6.14702 0.61958 0.77255 0.48576 0.95510 9 4.03501 6.62413 1.96977 3.08902 6.14438 4.16966 4.90276 5.75628 4.09186 5.20458 6.10286 0.52059 4.88084 4.09325 4.79559 2.35439 4.39338 5.21713 7.33937 5.73607 9 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00657 5.42467 6.14702 0.61958 0.77255 0.48576 0.95510 10 4.17181 5.48709 5.84730 5.27632 3.78492 5.36114 2.50728 3.21995 4.96996 0.77484 1.31811 5.42219 5.55217 5.10740 5.01079 4.71933 4.38480 3.42345 5.77785 4.59240 10 - B 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00657 5.42467 6.14702 0.61958 0.77255 0.48576 0.95510 11 5.00599 6.10390 6.93988 6.37173 3.90706 6.49732 6.68778 3.21051 6.22924 0.44831 1.44477 6.72602 6.23430 5.84284 6.04235 6.00777 5.17615 3.64064 6.32137 5.48604 11 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00657 5.42467 6.14702 0.61958 0.77255 0.48576 0.95510 12 3.38553 4.82627 4.85996 1.89940 3.72350 4.50313 4.76072 1.76996 4.16634 1.43864 3.78371 4.49039 4.85153 4.37452 4.32298 3.80450 3.61602 2.94116 5.34334 1.83594 12 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00657 5.42467 6.14702 0.61958 0.77255 0.48576 0.95510 13 3.12940 4.75183 4.19676 3.63083 3.87820 4.14791 4.43459 2.35465 3.56597 2.96380 3.86918 2.49938 1.45631 3.84502 3.86721 2.40320 3.36569 2.23396 5.35262 2.69261 13 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00657 5.42467 6.14702 0.61958 0.77255 0.48576 0.95510 14 2.32449 5.58818 2.54746 2.77471 4.93298 3.85414 4.04065 4.41724 1.73626 3.89253 4.62966 3.32222 2.64600 2.41282 2.51429 3.04475 1.98612 3.97884 6.02043 4.61167 14 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00657 5.42467 6.14702 0.61958 0.77255 0.48576 0.95510 15 3.08018 5.58583 2.53837 1.73825 4.92847 2.69705 4.04132 4.41303 2.77842 3.89023 4.62767 2.37758 4.24658 3.13879 2.52110 2.33186 2.43285 2.64917 6.02014 4.61003 15 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00657 5.42467 6.14702 0.61958 0.77255 0.48576 0.95510 16 1.71509 6.06421 1.07938 2.99500 5.51452 1.91448 4.52646 5.02321 2.38475 4.50640 5.29908 3.56007 4.61487 3.66664 3.97381 3.51106 3.86509 4.55719 6.65050 5.18974 16 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00657 5.42467 6.14702 0.61958 0.77255 0.48576 0.95510 17 3.11368 5.61738 2.45470 2.17044 4.96627 3.87722 4.05999 4.44808 1.31046 3.91946 4.65927 3.34472 4.27262 2.35228 2.49881 3.07515 3.34339 2.57477 6.04291 4.63912 17 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00657 5.42467 6.14702 0.61958 0.77255 0.48576 0.95510 18 3.14305 5.30481 3.54319 1.48460 4.53185 3.96738 4.16576 3.94733 2.32221 1.69139 4.37956 3.50689 4.35941 3.32480 3.37724 2.36237 3.37267 3.63539 2.84915 4.47845 18 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00657 5.42467 6.14702 0.61958 0.77255 0.48576 0.95510 19 3.16203 5.36178 3.55213 3.04345 4.72206 1.60469 4.25196 4.13833 2.32934 3.73579 4.54395 1.83870 4.39032 3.40069 3.48326 3.20021 2.38998 2.08296 5.96344 4.62958 19 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.19442 5.42467 1.75862 0.61958 0.77255 0.48576 0.95510 20 3.00109 5.29362 3.35026 2.79087 4.56300 3.81048 4.00380 3.99541 2.27049 3.56453 4.35703 2.47520 4.20105 3.13447 1.98562 2.17970 2.32942 2.50257 2.97760 4.41978 20 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.13478 5.23817 2.11374 0.61958 0.77255 1.03596 0.43833 21 2.98094 4.61484 4.01049 3.43784 3.72354 3.99448 4.25244 1.96105 3.33968 2.81432 3.72299 1.78820 4.37085 3.64835 2.48953 3.25511 3.21250 2.17250 5.19569 2.46649 21 - E 2.68598 4.42297 2.77592 2.73195 3.46063 2.40585 3.72567 3.29426 2.67813 2.68936 4.24762 2.90419 2.73812 3.18218 2.89873 2.37959 2.77496 2.98455 4.58549 3.61259 1.76045 0.33640 2.17424 0.78526 0.60881 1.25427 0.33587 22 1.30240 6.01147 1.79073 1.31955 5.34916 3.78285 4.28696 4.86834 3.26117 4.34732 5.16441 3.24848 4.37797 3.43746 3.84991 3.32396 3.71094 4.41638 6.49784 4.99495 25 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01011 4.99497 5.71732 0.61958 0.77255 0.16669 1.87381 23 5.23163 0.03960 6.49681 6.55460 6.69068 5.32866 7.01674 6.51704 6.57814 6.08046 7.27916 6.45800 6.05557 6.85328 6.41113 5.50000 5.77529 6.05630 7.46006 6.91833 26 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00657 5.42467 6.14702 0.61958 0.77255 0.48576 0.95510 24 2.39477 5.67085 2.32591 3.04467 5.20057 3.98110 4.35583 4.67246 3.10125 4.17374 4.94417 3.56645 4.47651 3.47887 0.87858 2.21590 3.59194 4.21925 6.31245 4.93123 27 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00657 5.42467 6.14702 0.61958 0.77255 0.48576 0.95510 25 3.09064 5.54268 3.35692 2.80506 4.87180 3.86868 4.06054 4.34127 2.22880 3.84270 4.59479 2.23696 4.26410 1.88674 3.28146 1.96793 2.02655 2.76210 5.99163 4.59686 28 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00657 5.42467 6.14702 0.61958 0.77255 0.48576 0.95510 26 5.23163 0.03960 6.49681 6.55460 6.69068 5.32866 7.01674 6.51704 6.57814 6.08046 7.27916 6.45800 6.05557 6.85328 6.41113 5.50000 5.77529 6.05630 7.46006 6.91833 29 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00657 5.42467 6.14702 0.61958 0.77255 0.48576 0.95510 27 3.18011 5.69827 2.16219 2.80784 5.04192 1.81078 4.12623 4.53126 2.14117 4.00509 4.74921 3.36175 2.08965 2.34864 3.38458 2.40929 3.41659 4.09022 6.13442 4.71475 30 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00657 5.42467 6.14702 0.61958 0.77255 0.48576 0.95510 28 2.06026 5.23571 4.87442 4.65236 4.28078 4.15238 5.19485 4.57852 4.66348 4.22668 5.16118 4.60786 4.90053 4.88253 4.85039 2.18637 3.90144 4.14584 5.85819 0.52612 31 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00657 5.42467 6.14702 0.61958 0.77255 0.48576 0.95510 29 3.10791 5.43079 3.43034 1.41564 4.71000 3.90701 2.65726 2.60129 2.35653 3.70432 4.49079 3.40805 4.29910 2.58071 3.31528 3.10905 3.33794 2.12442 5.90204 4.54141 32 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00657 5.42467 6.14702 0.61958 0.77255 0.48576 0.95510 30 3.17088 5.49811 3.45586 1.65098 2.12592 3.95238 4.12754 4.22409 2.24875 3.76489 4.55931 3.44923 4.34848 2.16894 3.34193 3.16593 3.40033 3.86078 5.85645 2.05386 33 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00657 5.42467 6.14702 0.61958 0.77255 0.48576 0.95510 31 4.44177 6.65261 3.62111 0.92349 6.36223 4.55504 5.37000 6.04145 4.46574 5.48481 6.44387 4.22603 0.76046 4.59870 4.98667 4.36893 4.81837 5.53406 7.35735 6.09548 34 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00657 5.42467 6.14702 0.61958 0.77255 0.48576 0.95510 32 1.50629 4.75225 4.18896 3.61841 2.68993 4.14296 4.42803 1.88020 2.38782 2.96429 3.86872 3.96751 4.52612 3.83266 3.85528 2.40308 2.49461 3.01827 5.35556 4.13901 35 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00657 5.42467 6.14702 0.61958 0.77255 0.48576 0.95510 33 3.47427 6.03253 1.37721 1.67548 5.37988 2.60314 4.38055 4.88899 3.24110 4.35773 5.12990 3.47046 4.52088 3.50524 3.78259 1.73870 2.52377 4.43621 6.49292 5.03175 36 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00657 5.42467 6.14702 0.61958 0.77255 0.48576 0.95510 34 2.42219 5.60908 2.48451 2.24991 4.95362 2.64160 4.05329 4.44067 2.79348 3.91444 4.65124 2.64034 4.25677 1.88218 3.28833 2.06681 2.42437 3.99971 6.04200 4.62875 37 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00657 5.42467 6.14702 0.61958 0.77255 0.48576 0.95510 35 3.11131 5.15245 3.59606 1.98443 1.70191 3.97177 4.19887 2.57742 3.05528 3.39623 4.24077 2.70838 2.85077 3.39212 3.49636 2.06504 3.34489 3.46391 5.68706 4.38557 38 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00443 5.42253 * 0.61958 0.77255 0.00000 * //