HMMER3/b [3.0 | March 2010] NAME Chlam_PMP ACC PF02415.12 DESC Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat LENG 28 ALPH amino RF no CS no MAP yes DATE Sat Oct 6 14:47:45 2012 NSEQ 528 EFFN 528.000000 CKSUM 1868906327 GA 20.60 12.50; TC 20.60 12.50; NC 20.50 12.40; BM hmmbuild HMM.ann SEED.ann SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq STATS LOCAL MSV -7.1782 0.73298 STATS LOCAL VITERBI -7.7874 0.73298 STATS LOCAL FORWARD -3.3550 0.73298 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 2.28257 4.39432 3.31473 3.11558 3.08214 2.09904 4.41090 2.87291 3.09679 3.04955 5.15535 2.54459 2.99868 3.46025 3.66394 2.23407 2.38334 2.99444 5.58974 3.47594 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00008 9.85340 10.57574 0.61958 0.77255 0.00000 * 1 3.04559 9.37269 2.16153 1.94948 4.92522 2.25910 4.97269 4.40195 3.13223 4.23536 5.96965 2.23059 2.63430 2.53513 3.96058 1.82453 3.11934 4.34512 9.80457 4.92345 1 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00008 9.85340 10.57574 0.61958 0.77255 0.48576 0.95510 2 2.56467 3.29912 9.05313 8.43671 3.24851 4.45382 8.57917 1.18918 8.21802 1.77582 4.41053 8.41229 8.60818 8.34623 8.22058 3.07617 2.66464 1.71313 9.06830 2.95975 2 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00008 9.85340 10.57574 0.61958 0.77255 0.48576 0.95510 3 3.80151 4.84826 4.08222 2.40789 4.09722 7.85615 5.94198 2.08978 4.63002 2.16142 5.80777 4.11421 8.24063 4.04218 2.86429 1.80369 1.49126 2.55088 9.41314 3.42283 3 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00008 9.85340 10.57574 0.61958 0.77255 0.48576 0.95510 4 8.75170 4.95039 10.91304 10.45767 0.30953 10.55326 11.27923 2.10827 10.46362 3.08316 4.79117 10.74178 10.48996 10.40326 10.50803 4.76882 8.98866 2.59688 11.02085 10.05306 4 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00008 9.85340 10.57574 0.61958 0.77255 0.48576 0.95510 5 3.57438 4.61114 3.17712 2.35031 4.11849 4.87128 5.71115 3.37356 2.77742 2.89356 5.29727 2.99592 8.03097 3.51069 3.74332 1.08397 1.89013 3.61205 9.79155 3.87916 5 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00008 9.85340 10.57574 0.61958 0.77255 0.48576 0.95510 6 4.71400 9.37282 2.87422 2.99971 8.71930 1.32433 4.79302 6.04645 2.49146 4.92086 8.41311 1.11065 8.02564 3.54258 4.19773 2.38922 5.27906 5.98005 9.80466 3.11088 6 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00008 9.85340 10.57574 0.61958 0.77255 0.48576 0.95510 7 9.91751 11.50069 9.10601 4.60644 11.45753 9.68713 10.83501 3.22961 10.26931 10.85132 12.00893 0.05138 10.39739 10.24033 10.68282 9.91633 10.34561 11.02462 12.07710 11.40117 7 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00008 9.85340 10.57574 0.61958 0.77255 0.48576 0.95510 8 2.21163 4.72921 5.80446 3.94313 3.78604 3.60987 3.77316 3.36645 1.93287 2.87412 5.17818 4.33009 8.07135 2.84495 3.17267 1.68630 1.64098 3.28063 5.65326 4.46000 8 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00194 9.85340 6.27094 0.61958 0.77255 0.48576 0.95510 9 0.85921 3.56273 4.38809 4.35229 8.39943 2.51379 7.90927 4.23042 3.72691 5.11466 4.75105 4.53450 8.09950 7.04759 3.64127 1.59688 2.55965 2.66323 9.63684 8.28868 9 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.38382 9.85153 1.14354 0.61958 0.77255 1.00100 0.45810 10 2.83040 3.69533 4.57478 2.45763 2.25737 2.21359 4.14196 3.09786 3.54533 2.93849 4.94531 2.48543 4.27459 4.22020 2.44856 2.74851 2.03192 3.17397 5.81091 4.01340 10 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.05943 9.46783 2.85391 0.61958 0.77255 5.24479 0.00529 11 3.82119 4.19489 3.05175 4.52137 4.10321 2.66222 4.71165 2.55173 4.34578 3.54425 4.34192 2.77882 2.59141 3.95176 3.60706 2.21095 1.78851 1.53197 9.26363 7.89173 11 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.04161 9.40852 3.20228 0.61958 0.77255 5.35932 0.00472 12 3.27091 4.21413 3.00786 3.90288 2.30742 3.24418 4.40382 3.69922 4.32357 3.07984 7.85699 2.18119 2.34903 2.76593 4.90133 2.02990 2.62390 2.22928 5.33546 3.04598 12 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.05167 9.36705 2.99032 0.61958 0.77255 5.42881 0.00440 13 2.34378 5.50207 3.46972 2.61286 1.84267 4.60462 4.55313 3.53857 3.85491 2.71101 7.79604 3.85815 2.10545 3.46773 5.05912 1.85009 3.43351 2.32788 4.75382 3.75470 13 - - 2.43270 4.84327 2.95135 2.95028 3.74223 2.59545 4.17958 3.33291 2.87010 2.89119 4.71832 2.94728 2.42347 3.09481 3.21612 2.08802 2.26776 3.03465 5.03160 3.87768 2.71880 0.19228 2.21670 3.19848 0.04168 5.50542 0.00407 14 2.28886 5.14441 4.44842 6.45480 7.31978 3.81642 4.55814 5.04952 6.42544 3.95302 4.95843 2.97816 2.25828 2.95146 4.59627 1.68494 1.34742 4.74658 3.61081 2.17800 58 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00015 9.20018 9.92253 0.61958 0.77255 1.66563 0.20958 15 2.02326 8.86923 3.13248 3.45058 5.28474 3.13933 4.10066 4.33563 3.29650 3.54310 7.91151 3.20411 1.45629 3.58806 6.56597 2.70248 1.49381 3.14318 5.49419 5.05204 59 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00013 9.35890 10.08124 0.61958 0.77255 3.01799 0.05014 16 3.07195 4.62141 2.91888 3.85483 5.61335 2.80931 4.54926 4.97808 3.45982 4.65629 4.99563 2.79952 3.28694 3.55516 3.79787 1.74034 1.02317 2.89981 9.34307 7.93201 60 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00012 9.38720 10.10955 0.61958 0.77255 2.22048 0.11491 17 3.27851 5.74786 2.53074 2.12963 4.68414 3.10833 2.47223 3.92247 3.85183 2.75061 4.15952 2.50212 2.06459 5.33380 5.13449 2.44959 2.51097 3.79082 9.38588 2.38468 61 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00012 9.44758 10.16993 0.61958 0.77255 2.09099 0.13189 18 1.71568 5.19596 2.45837 3.42315 5.56090 2.51776 3.89338 4.40395 2.03983 3.90575 5.03550 2.43945 4.40012 3.90481 5.46808 2.30452 2.03955 2.74149 5.48982 8.04725 62 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00011 9.50567 10.22801 0.61958 0.77255 0.27724 1.41830 19 1.76807 3.97705 2.83751 3.51700 6.18299 2.22071 3.80812 3.80729 3.24321 2.92300 5.38820 3.29923 2.06760 3.41352 4.02128 2.55110 2.39867 3.69099 9.72562 2.78281 63 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00008 9.78005 10.50240 0.61958 0.77255 0.15426 1.94527 20 2.42006 4.51112 3.77637 3.23549 5.07381 1.31409 4.83073 3.85557 2.24801 3.75147 5.49181 2.92503 4.16646 3.94815 3.02730 2.26318 2.98906 2.41379 5.92137 4.06863 64 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00008 9.84391 10.56626 0.61958 0.77255 0.09125 2.43941 21 3.59717 4.28748 2.77216 2.98518 3.64999 1.64977 4.60994 3.83608 2.20735 3.50469 5.90342 2.10515 5.33594 2.93714 3.45410 2.10249 4.02574 2.84272 4.66571 3.36819 65 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00008 9.85340 10.57574 0.61958 0.77255 0.48576 0.95510 22 4.61010 9.65518 10.00077 10.06799 10.63684 0.03804 10.67257 10.20317 10.07475 9.86948 10.59050 4.00690 9.32167 10.13806 4.82932 7.96740 8.35157 9.15961 11.88458 10.98511 66 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00008 9.85340 10.57574 0.61958 0.77255 0.48576 0.95510 23 3.02697 9.51770 9.89433 9.97285 10.52766 0.08792 10.58512 10.06982 5.07549 9.75545 10.45861 4.24589 9.19659 10.04155 9.97909 4.25663 8.20236 9.01448 11.85658 10.89009 67 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00008 9.85340 10.57574 0.61958 0.77255 0.48576 0.95510 24 0.23194 9.49400 10.31108 10.37916 10.51929 2.06841 10.66166 10.05118 10.16496 4.93956 10.44827 9.30161 9.19391 10.15030 10.01704 4.36940 4.73572 2.96768 11.85429 10.91374 68 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00008 9.85340 10.57574 0.61958 0.77255 0.48576 0.95510 25 4.60486 4.47850 10.47810 10.03837 2.87359 5.42139 10.87169 0.38944 10.01626 1.82899 8.68741 10.18656 10.20912 10.30519 10.19862 9.46550 4.10600 2.77019 11.15136 9.89744 69 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00008 9.85340 10.57574 0.61958 0.77255 0.48576 0.95510 26 3.12277 2.80440 4.37166 5.03569 1.66555 4.32516 3.22989 5.85373 4.43226 2.62424 5.47568 4.32586 8.35871 4.03587 4.74905 2.74339 4.69737 4.07691 4.38809 0.91547 70 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00008 9.85340 10.57574 0.61958 0.77255 0.48576 0.95510 27 1.24935 2.43161 5.43624 8.39357 3.75612 1.83768 5.05111 3.18847 5.65650 3.69690 5.89911 2.37791 8.60072 5.60001 8.20213 2.20140 2.21048 3.24484 9.07066 5.71040 71 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00008 9.85340 10.57574 0.61958 0.77255 0.48576 0.95510 28 3.08543 6.06615 3.38842 1.63697 6.02968 3.30508 4.86680 4.08351 1.99543 4.05254 5.66310 3.48770 3.03532 2.21486 2.99678 2.66026 1.82423 4.25362 9.80442 3.91707 72 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00005 9.85337 * 0.61958 0.77255 0.00000 * //