# STOCKHOLM 1.0 #=GF ID SBP_bac_7 #=GF AC PF03480.8 #=GF DE Bacterial extracellular solute-binding protein, family 7 #=GF AU Bateman A #=GF SE Pfam-B_808 (release 7.0) #=GF GA 20.50 20.50; #=GF TC 20.60 20.50; #=GF NC 20.40 20.40; #=GF BM hmmbuild HMM.ann SEED.ann #=GF SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq #=GF TP Family #=GF WK Tripartite_ATP-independent_periplasmic_transporter #=GF RN [1] #=GF RM 1809844 #=GF RT Purification, characterization and nucleotide sequence of the #=GF RT periplasmic C4-dicarboxylate-binding protein (DctP) from #=GF RT Rhodobacter capsulatus. #=GF RA Shaw JG, Hamblin MJ, Kelly DJ; #=GF RL Mol Microbiol 1991;5:3055-3062. #=GF RN [2] #=GF RM 16702222 #=GF RT Conservation of structure and mechanism in primary and secondary #=GF RT transporters exemplified by SiaP, a sialic acid binding #=GF RT virulence factor from Haemophilus influenzae. #=GF RA Muller A, Severi E, Mulligan C, Watts AG, Kelly DJ, Wilson KS, #=GF RA Wilkinson AJ, Thomas GH; #=GF RL J Biol Chem. 2006;281:22212-22222. #=GF RN [3] #=GF RM 16262798 #=GF RT Sialic acid transport in Haemophilus influenzae is essential for #=GF RT lipopolysaccharide sialylation and serum resistance and is #=GF RT dependent on a novel tripartite ATP-independent periplasmic #=GF RT transporter. #=GF RA Severi E, Randle G, Kivlin P, Whitfield K, Young R, Moxon R, #=GF RA Kelly D, Hood D, Thomas GH; #=GF RL Mol Microbiol. 2005;58:1173-1185. #=GF RN [4] #=GF RM 20656493 #=GF RT Caught in a TRAP: substrate-binding proteins in secondary #=GF RT transport. #=GF RA Fischer M, Zhang QY, Hubbard RE, Thomas GH; #=GF RL Trends Microbiol. 2010;18:471-478. #=GF DR INTERPRO; IPR018389; #=GF DR TC; 2.A.56; #=GF CC This family of proteins is involved in binding extracellular #=GF CC solutes for transport across the bacterial cytoplasmic membrane. #=GF CC This family includes Swiss:P37735, a C4-dicarboxylate-binding #=GF CC protein [1] and the sialic acid-binding protein SiaP. The #=GF CC structure of the SiaP receptor has revealed an overall topology #=GF CC similar to ATP binding cassette ESR (extracytoplasmic solute #=GF CC receptors) proteins [2]. Upon binding of sialic acid, SiaP #=GF CC undergoes domain closure about a hinge region and kinking of an #=GF CC alpha-helix hinge component [2]. #=GF SQ 35 #=GS Q9WYF8_THEMA/28-324 AC Q9WYF8.1 #=GS Q9WYF8_THEMA/28-324 DR PDB; 2HPG A; 28-324; #=GS Q9WYF8_THEMA/28-324 DR PDB; 2HPG B; 28-324; #=GS Q9WYF8_THEMA/28-324 DR PDB; 2HPG D; 28-324; #=GS Q9WYF8_THEMA/28-324 DR PDB; 2HPG C; 28-324; #=GS Q9CKG7_PASMU/35-318 AC Q9CKG7.1 #=GS Q9KR64_VIBCH/28-309 AC Q9KR64.1 #=GS SIAP_HAEIN/30-313 AC P44542.1 #=GS SIAP_HAEIN/30-313 DR PDB; 2XWI A; 7-290; #=GS SIAP_HAEIN/30-313 DR PDB; 2XWK A; 7-290; #=GS SIAP_HAEIN/30-313 DR PDB; 2WX9 A; 7-290; #=GS SIAP_HAEIN/30-313 DR PDB; 2CEY A; 7-290; #=GS SIAP_HAEIN/30-313 DR PDB; 2WYP A; 7-290; #=GS SIAP_HAEIN/30-313 DR PDB; 3B50 A; 7-290; #=GS SIAP_HAEIN/30-313 DR PDB; 2CEX B; 7-290; #=GS SIAP_HAEIN/30-313 DR PDB; 2CEX A; 7-290; #=GS SIAP_HAEIN/30-313 DR PDB; 2XWV A; 7-290; #=GS SIAP_HAEIN/30-313 DR PDB; 2CEX D; 7-290; #=GS SIAP_HAEIN/30-313 DR PDB; 2XWO A; 7-290; #=GS SIAP_HAEIN/30-313 DR PDB; 2WYK A; 7-290; #=GS SIAP_HAEIN/30-313 DR PDB; 2V4C A; 7-290; #=GS SIAP_HAEIN/30-313 DR PDB; 2XXK A; 7-290; #=GS SIAP_HAEIN/30-313 DR PDB; 2CEX C; 7-290; #=GS SIAP_HAEIN/30-313 DR PDB; 2XA5 A; 7-290; #=GS Q9CKB5_PASMU/28-311 AC Q9CKB5.1 #=GS Q9HXL6_PSEAE/39-325 AC Q9HXL6.1 #=GS Q9CKH4_PASMU/30-312 AC Q9CKH4.1 #=GS YIAO_ECOLI/30-313 AC P37676.1 #=GS Y1028_HAEIN/31-314 AC P44992.1 #=GS Q9CLH9_PASMU/31-314 AC Q9CLH9.1 #=GS Q9K9H4_BACHD/47-331 AC Q9K9H4.1 #=GS Q9A8A8_CAUCR/31-313 AC Q9A8A8.1 #=GS Q9KEZ8_BACHD/45-326 AC Q9KEZ8.1 #=GS Y4MM_RHISN/61-342 AC P55572.1 #=GS Q9K7H1_BACHD/42-330 AC Q9K7H1.1 #=GS DCTB_BACSU/49-334 AC P96600.1 #=GS Q9K999_BACHD/48-333 AC Q9K999.1 #=GS Q9Z4J3_WOLSU/27-316 AC Q9Z4J3.1 #=GS DCTP_RHOCA/33-318 AC P37735.1 #=GS Q9KQR9_VIBCH/33-317 AC Q9KQR9.1 #=GS Q9HVH5_PSEAE/32-316 AC Q9HVH5.1 #=GS Q9I561_PSEAE/31-315 AC Q9I561.1 #=GS Q9HU18_PSEAE/31-315 AC Q9HU18.1 #=GS Q9CNZ5_PASMU/73-357 AC Q9CNZ5.1 #=GS Y052_HAEIN/30-313 AC P71336.1 #=GS P73589_SYNY3/60-348 AC P73589.1 #=GS Q9CKT1_PASMU/28-321 AC Q9CKT1.1 #=GS Q9KSI3_VIBCH/78-367 AC Q9KSI3.1 #=GS Q9KUM7_VIBCH/37-326 AC Q9KUM7.1 #=GS O30835_RHOSH/36-324 AC O30835.1 #=GS P74100_SYNY3/46-334 AC P74100.1 #=GS Q9RBR1_9PROT/32-311 AC Q9RBR1.1 #=GS O83923_TREPA/28-321 AC O83923.1 #=GS O83923_TREPA/28-321 DR PDB; 4DI3 E; 14-307; #=GS O83923_TREPA/28-321 DR PDB; 4DI3 D; 14-307; #=GS O83923_TREPA/28-321 DR PDB; 3U65 A; 14-307; #=GS O83923_TREPA/28-321 DR PDB; 4DI4 B; 14-307; #=GS O83923_TREPA/28-321 DR PDB; 3U65 B; 14-307; #=GS Q981H4_RHILO/99-384 AC Q981H4.1 #=GS Q9F7C9_RHIRD/29-316 AC Q9F7C9.1 Q9WYF8_THEMA/28-324 FGHVL.APGEPYHQAF.LKWAKAVEEK.TNGDV..RIEVFP..SSQLGVEE.DIIEQIRMGA......PVGWNTDSARLGMY.VKDIGV..MNLAYFIDFMGAKTPEEAIEVLKK.IKQSPTM..QKWLKELEQRFGIKVL..SFYWVQGYRHFVT.N.KPIRKPEDLNG..LRIRTPGAPAWQESIRSLGAIPVAVNFGEIYTAVQTRAVDGAELTYANV.YNGGLYEVLKYMSETG..HFL...LINFEIVSADWFNSLPKEYQKIIEEEMDKAGIEVSLKIMKELEEEYKQKCIE.....KGMAVIPASEIDKEAF.MEKAKQAYK...NLGLEN #=GR Q9WYF8_THEMA/28-324 SS EES-S.STTSHHHHHH.HHHHHHHHHH.TTTSE..EEEEE-..-SSSTTHH.HHHHHHHHT-......SEEEEEEHHHHTTT.SGGGGG..GGSTTHHHHTT--SHHHHHHHHHH.HHHSHHH..HHHHHHHHHHH-EEEE..EEEEEEEEEEEEE.S.S--SSGGGGTT..-EEE--SSHHHHHHHHHHTSEEE---GGGHHHHHHTTS-SEEEE-HHHH.HHTTGGGT--EEEEEE..EEE...EEEEEEEEHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH.....TT-EEE-GGGS-HHHH.HHHHHHHHH...HCT-HH Q9CKG7_PASMU/35-318 VSTTA.SLGSLQYDTT.KYFVDVTNQKLSEAKLDYRLNFFG..SGQLGNDK.DTQQKLKLGT......IDIALLSSTLATNI..PQMAI..FELPFLI.........TNRQQLNK.IEQQVFY..PFVAPEVEKK.GYKII..GL.WENGFRSITN.NTRPINRPEDLKG..LKIRTPSSSWRLKMFKAWGANPTPIPFGDVFIGLRTGVIDGQENPLTNI.YAAKLQEVQKYLSITN..HVY...SPAYLTVGKNTYQKLPENVRKIIEAGAKEAQ.TWGYQEAEKRESELEKKLVE.....SGMTL...NNANIQAF.IEASQPIYD...E.FISE Q9KR64_VIBCH/28-309 MGMQA.SVGSVEYNSA.KMLADTLEEM.SQGEI..KLALYP..SAQLGDDR.AMLQQLTLGD......LDITYAEFGRMGLW.IPRAEA..VMLPYVA.........KDFDHLRR.MFESDFG..QGVRDEMLQKFNWRAL..DT.WYNGTRETTS.N.RPLNSIEDFKG..LKLRVPNAKQNLNYAKLSGASPTPMSFSEVYLALQTNAVDGQENPLPTI.KTMKFYEVQKNLAMTH..HIV...NDQMVIISESTWQKLSDTDKDIIQKAVQKVG.DAHTQTVKTQEAELVSFFKS.....EGINV...TYPDLEPF.REAMQPLYK...E.FDSN SIAP_HAEIN/30-313 FGMNA.GTSSNEYKAA.EMFAKEVKEK.SQGKI..EISLYP..SSQLGDDR.AMLKQLKDGS......LDFTFAESARFQLF.YPEAAV..FALPYVI.........SNYNVAQKALFDTEFG..KDLIKKMDKDLGVTLL..SQ.AYNGTRQTTS.N.RAINSIADMKG..LKLRVPNAATNLAYAKYVGASPTPMAFSEVYLALQTNAVDGQENPLAAV.QAQKFYEVQKFLAMTN..HIL...NDQLYLVSNETYKELPEDLQKVVKDAAENAA.KYHTKLFVDGEKDLVTFFEK.....QGVKI...THPDLVPF.KESMKPYYA...EFVKQT #=GR SIAP_HAEIN/30-313 SS EE-SS.-TTSHHHHHH.HHHHHHHHHH.TTTSE..EEEEE-..TTTT--HH.HHHHHHHTTS......-SEEEE-GGGGGGT.SGGGGG..GGSTTTS.........-SHHHHHHHHHSSHHH..HHHHHHHHHHHSEEEE..EE.EEEEEEEEEE.S.S--SSGGGGTT..-EEEE-SSHHHHHHHHHHT-EEEE--GGGHHHHHHTTSSSEEEEEHHHH.HHTTGGGS-SEEEEEE..EEE...EEEEEEEEHHHHTTS-HHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHH.....TT-EE...E---SHHH.HHHTHHHHH...HHHHHH Q9CKB5_PASMU/28-311 FGMVA.GPSSNEYKAV.EFFAKEVKEK.SNGKI..DVAIFP..SSQLGDDR.VMIKQLKDGA......LDFTLGESARFQIY.FPEAEV..FALPYMI.........PNFETSKKALLDTKFG..QGLLKKIDKELNVQVL..SV.AYNGTRQTTS.N.RAINSIEDMKG..LKLRVPNAATNLAYAKYVGAAPTPMAFSEVYLALQTNSVDGQENPLPTI.QAQKFYEVQKYLALTN..HIL...NDQLYLISNDTLADLPEDLQKVVKDAAAKAA.EYHTKLFVDGENSLVEFFKS.....QGVTV...TQPDLKPF.KAALTPYYD...EYLKKN Q9HXL6_PSEAE/39-325 YNGAADSEKNLVHLFA.SNLKRLAEEK.SGGEL..QFKLYP..NSMLGEEE.QRMEQVMTGP.......GLNIASFAGIAPL.FPEIYV..SATPFMF.........KDAAAAHAFFDSGSYW..QAAREAFRERTGTELL..AVVEEGGFLNFTN.GKKPIHGPADFQG..LRFRAM.DPSQVALYEAFGASGTPIPWTELYMGLRTGVADGQMNPTSYI.ILGSLYQVQKYLTLAN..IQY...SDQFLVANGDLLASLPAKERQALLDAAAEAS.RLNREAVAAQQERDLAFLKE.....KGMQIIQPSADDLAAF.REKGQPSYL...A.WLKT Q9CKH4_PASMU/30-312 LSHYG.SPSDTVTKAT.ELMAKRAHEL.SNGRI..TIKLHP..NSELGNSG.AQIDGVRMGT......IDIVVVGNPYYTTF.NEELNL..LDLPFLF.........RDETHVEK.VLAGDVG..EHLLASFEKV.GLKGL..AF.YEVGFRDITN.NKRPISTVKDLSH..LKLRTTPNPAHISAFKEWGVNPTPMPFNEVYFSLKTGVIDGQENPVHHI.YNNNLQEVQKYLSLTH..HAY...TAAPMTMNLDTFNSLDKETQRILLQVAKEGA.ELEKQLNIEENKIYLGKLKE.....QGMEI..EYSPDTASF.QEGAKKAWH...D.YAKK YIAO_ECOLI/30-313 FGYET.SQTDSQHIAA.KKFNDLLQER.TKGEL..KLKLFP..DSTLGNAQ.AMISGVRGGT......IDMEMSGSNNFAGL.SPVMNL..LDVPFLF.........RDTAHAHK.TLDGKVG..DDLKASLEGK.GLKVL..AY.WENGWRDVTN.SRAPVKTPADLKG..LKIRTNNSPMNIAAFKVFGANPIPMPFAEVYTGLETRTIDAQEHPINVV.WSAKFFEVQKFLSLTH..HAY...SPLLVVINKAKFDGLSPEFQQALVSSAQEAG.NYQRKLVAEDQQKIIDGMKE.....AGVEV..ITDLDRKAF.SDALGNQVR...DMFVKD Y1028_HAEIN/31-314 FGYEA.PRSDSQHSAA.KKFNDLLMKK.TKGEI..KLKLFP..DSTLGNAQ.TMISSVRGGT......IDLEMSGSPNFTGL.EPKLNV..IDIPFIF.........KDREHVYK.VLDGEVG..QNLLKDLEKQ.GLKGL..AF.WDVGFRAFSN.SKQTVTKPEHIKG..LKVRTNQNPMYIEAFKLLGSNPVPMPLAELYTALETRAVDAQEHPIGIF.WSSKLYEVQKYLSLTN..HGY...TPLIVVMNKAKFDSLLPALQTAIIEAAKEAG.QFQRDLNVKNEQNIISKLRK.....QGVEV..IEKINTEPF.KTLIEEKVR...KSFIEK Q9CLH9_PASMU/31-314 FGYEA.PRSDTQHEAA.KKFNELLKEK.TKGEI..KLSLFP..DSTLGNAQ.TMISAVRGGT......IDLEMSGSPNFSGL.VPKLNV..IDIPFIF.........QNREHAYA.VLDGEIG..QGLLKELEAQ.GLKGL..AF.WEVGFRSFTN.SKHPVKTPDDIKG..LKVRTNQNPMYIQAFSILGANPVPMPLSELYTALETRAVDAQEHPVGIV.WSAKLYEVQKHLSLTN..HGY...TPLIVVMNKAKFDGLSPALQSAILEAAKEAG.AYQRKLNLDNEKGIIEKMQK.....AGIQV..IETVDTKPF.KAAIESEVR...KAFIEK Q9K9H4_BACHD/47-331 AGIGL.NSEHPQYKGL.EKFKELVEER.SGGQM..VVETYH..SGQLGDDR.LMMEALQLGS......QEVTVPSTAPVANF.VSEFSV..FDFPFLF.........PSSDVADE.VLDGDVG..QALLQKLEEQ.NLVGL..AF.WENGFRNVTN.SKRPIETLEDFNG..LTLRTMENDLHLEAFRALGANPTPMAFTELFTAMQQGTVDGQENPYATI.YLEGYAEVQNHVSNTN..HIY...SPFVFMMSKPFFDGLTEEQQEIVREAALEAG.QYQRELNREANETYLSSLEE.....AGMTYTEISEVERMRM.IEAVEPVID...K.YAEQ Q9A8A8_CAUCR/31-313 GADSH.PAGYPTVEAV.NHFGALISQR.TNGRL..RLQNYA..GGQLGEEK.DTLEITVFGG......LDINRVNLAPLNPI.EPLTLV..PSLPFLF.........QSTDHMRR.SLDGAPG..RTILNSLERH.GLIGL..AF.YDSGERSFYN.TRGPIRTPADMRG..LKLRVQTSNLPIAMVQALGASPIPMSYGEVFQALVQGVIDGAENNWPSY.QDSRHFEVARFYSVTR..HVM...APEVLVASARTWAKLSSSDREIIRDAATESV.PFMRRLWEARETSARQAMID.....AGVEV..VEDLDRSAF.QAAMAPVWD...R.FITS Q9KEZ8_BACHD/45-326 LAHNL.SEDHPVHLGL.ARFAELVEER.SEGQI..TMEIFP..NGVLGDER.EVLEQVQAGG......VDITKVSAAALENF.SSQYAV..FSLPYVF.........ADEEHFFQ.SMESEAV..AQLFDETEAD.GFVGL..TW.YDSGARSFYT.VDQPIMHPDDLKG..LRIRVMDSQTQIEMMEALGGAPTPMPYGEIYTALQSGVVDGAESNPTAL.TTGKHGEVAKAFSFDE..HAR...IPDIAVISSAVWNEFTDEQRQFVRDAAKEST.EYQKDIWAEAVEEAIEEAEA.....MGVEF...HYPDQEPF.YQAVQPLHE...K.YRED Y4MM_RHISN/61-342 LGHGA.APGNPRTVAA.AKFAELVAEK.TAGRV..TINVAG..AETLGSDA.AMLTSLRTGA......LDVTANSQGATSAL.VPELAA..LGLPFLF.........ENTAKAMQ.VLGGPVG..AELVKRFEAV.GVVPL..DW.WDNGIRHLTN.SKRKVAAPAEVSG..MKIRTPADPMTMDIFQALGAATEQIAFGELYVALQQGVVDGQENPLANI.DSSKLYEVNKYISLTG..HKW...ESTPFLMSQIAQARLGGDLE.AVKAAAKEAG.ELQRKLSADKDAEVLAAFRR....ISAIEV...TEVDREGF.AKATASVVE...S.RRSP Q9K7H1_BACHD/42-330 FVTEE.TPGQVQYEYA.VEFAELLEEK.TDGRV..SMNVRD..FGSLGSEV.DQVEQLQQGI......LEFGIISPGFTGGL.VPEGQV..FSLQFFF.........PDDQEVTQQILNESVALNEKLAAFYEAQ.NIKPL..AF.MSEGAMQWTG..NSPLRSPDDFNG..FKMRTQESPLMLQTYGAYGADPQALSWSELYTSLDRSVVDGQENPIFFI.QDASFHEVQDHMTISN..HNT...YVAMVTVNNDLYESLPEDIQAAIHETIDEMR.PRGFEIQQQLNADLLDEIKN..DEANPTEVYELTEEERAAF.REIQEPIHQ.....FFRD DCTB_BACSU/49-334 FSHVV.AENTPKGLAA.NKFADLVNEK.SGGKI..KIEVFP..NGSLYSDI.EEIEALQNGD......VQFIAPSTSKLGML.SPEWGV..LDLPYAF.........TDYNAVKK.GLNGSIG..TQLFDSLKKN.QLKGL..AY.WTNGFKQITT.NQGPVKTPDDLKG..QDLRIMQSDVIEDQFKLLGATPHQESFNSTFQLLENNVVDGEENTISNI.YSKKFYNVQDYLTISS..HGY...LGYAVMTDEHFWKAQTPETRRILTEAMKETT.EWNETYAEQMNKEQLEEIKK....NSAIHIYELSDKEKQEW.MKRLDPVYR...Q.YEPI Q9K999_BACHD/48-333 FSHIT.AENTPKGLAV.THFAQLVREK.TDGWV..DIQVFP..NGILFTAQ.EEFVALKEQE......VHIIAPAFSEISLH.DPKWLI..MDMPYLF.........EDEEMLRA.VFDGEVG..EALFASLSEQ.GYHGL..SF.WENGFKQFTN.NVRPIRTPEDLEG..LSMRVMPSEALMKTFDHFGGIPKPFAFNEVYERLSEGAIDGTENSLTNI.YSKKFYRQQAYMTKSN..HNY...LGYAILMDQTVWDKLPIEYQTAIEDAMAETT.MWLRDHVNELNEGIYELLKE....SDQIEVYELTPEEKQQW.KEAVLPIYE...Y.YERQ Q9Z4J3_WOLSU/27-316 FAHVV.ASATPKGKAA.DFFAKRLEEI.TNGQI..KVQVFP..SAQLYDDD.RVFMAMKMDN......VQMAAPSFSKFTPL.APAFQL..FDLPFIF.........RDTAHLHK.VLDGEVG..EAIKQKIEDK.GFVAL..DY.WDAGFKQFSS.SKKPLIVPDDAKG..QKFRIMSSKVLEEQTRAVGGNPQVLPFSEVYSALQQGVVDAAENPLSNF.YNSKFHEVQSSLTISD..HGY...LGYLVVVSDKFWKSLPDDLKAKVKQAMKEAT.QFEREESAKDEAILLAKVEEYAKNTGKLQITKLTPAQKAEW.QKVMSTIYP...K.FYDV DCTP_RHOCA/33-318 FSHVV.APDTPKGKGA.AKFEELAEKY.TNGAV..DVEVYP..NSQLYKDK.EELEALQLGA......VQMLAPSLAKFGPLGVQDFEV..FDLPYIF.........KDYEALHK.VTQGEAG..KMLLSKLEAK.GITGL..AF.WDNGFKIMSA.N.TPLTMPDDFLG..LKMRIQSSKVLEAEMNALGAVPQVMAFSEVYQALQTGVVDGTENPPSNM.FTQKMNEVQKHATVSN..HGY...LGYAVIVNKQFWDGLPADVRTGLEKAMAEST.DYANGIAKEENEKALQAMKD....AGTTEFHELTAEERAAW.EEVLTPVHD...E.MAER Q9KQR9_VIBCH/33-317 FSHVTNTDKHPKGIAA.SLLEKRVNEE.MNGKA..CMQVFP..NSTLYDDD.KVLEALLNGD......VQLAAPSLSKFEKF.TKKYRI..FDLPFLF.........EDVDAVDR.FQSSAKG..EELKNAMTRR.GVKGL..EF.WHNGMKQISA.N.KPILVPADAKG..LKFRVQASDVLVAQFEQIGANPQKMSFAETYGGLQTKVIDGQENTWSNI.YGQKYFEVQDGTTETN..HGI...LDYLVVTSSKWWDGLPADVRDQFAKILNEVT.IERNAESNKVEELNKQYIIE.....AGGVVRTLTPEQRQQW.VDALKPVWQ...K.FEKD Q9HVH5_PSEAE/32-316 FSHVV.SDDTPKGKGA.LLFKKLAEER.LPGKV..KVEVYP..NSTLFGDA.DEIEALRANK......VQMLATSLSKFEPY.TKQLQV..FDLPFLF.........DDLEALKR.FQKRDKS..RELLRSMAKH.GIYGL..AY.WNNGMKQLSA.T.RELHRPDDAKG..LVFRIQPSSVLEAQFAMLGATAKQLSYAETLKAMQAGSVQGTENTWSNL.AGQKIDSVQPYITETN..HGA...LSYMLITSSAFWTGIPYQTRTELESIVDEVT.LVVNKEAEALNQKEREHLLA....AGKSRLVSLSAEEHEAW.RNAMKPLWK...N.YEAQ Q9I561_PSEAE/31-315 FSHVV.AENTPKGQGA.LLFKKLVEQR.LGGRV..EVDVYP..NSSLFGDG.KEMEALLLGD......VQMLAPSLAKFEQY.TRKVQI..FDLPFLF.........DDIQAVDR.FQRSPQG..RALLTSMQGK.GILGL..AY.WHNGMKQLSA.N.RPLLEPEDARG..LKFRVQASDVLNEQFRQLRAISRKMSFAEVYQGLQTGVVNGTENTWSNY.ESQKVNEVQKYFTESN..HGL...VDYMVITNAKFWNGLPADIREELQRIMDEVT.VQVNLEAERLNRDARQRILA....SGASEIHTLSPQQRADW.RQAMQPVWQ...K.FRGN Q9HU18_PSEAE/31-315 FSHVV.AEHTPKGQGA.LLFKKLVEER.LPGKV..KVEVYP..NSSLFGDG.KEMEALLLGD......VQIIAPSLAKFEQY.TKKLQI..FDLPFLF.........DNIQAVDR.FQQSPQG..KELLTSMQDK.GITGL..GY.WHNGMKQLSA.N.KPLREPKDARG..LKFRVQASKVLEEQFKAVRANPRKMSFAEVYQGLQTGVVNGTENPWSNI.YSQKMHEVQKYITESD..HGV...LDYMVITNTKFWNGLPEDVRGVLAKTMDEVT.VEVNKQAEALNQGDKQRIVE....AKTSEIIELTPEQRAEW.RKAMQPVWK...K.FEGE Q9CNZ5_PASMU/73-357 FSHVV.ANETPKGQGA.LMFQKLVEER.LAGKV..KVEVYP..NSSLYGDG.KEMEALLLNN......VQMLAPSLAKFDKY.TKKIQI..FDLPFLF.........DDIEAVQR.FEQSEAG..KSLLKSMEEK.GITGL..GY.WNNDLKQLSA.N.KELREPKDARG..LKFRVQNSEVLDAQFKALKAVPRKMAFGEMYQGLQTGVVNGAENPYSNI.YSQKIHEVQKFITESN..HGL...LSYMVIVNTNFWNSIPEDIRAELSKILDEVS.VEVNKKSHDLNLADKQKIID....SKASTIITLTPEQREKW.RDAVRPVWK...Q.FEGE Y052_HAEIN/30-313 LGHYN.SDIHPSHIALQEYFKKTIENE.TNHKY..EIRLYP..NNQLGGED.QIVNGLRNGT......IEAGITGL.LLQNV.DPIFGV..WEWPYLF.........KDNQEAKK.VLESPIA..NKIGQKMEKY.GIKLL..AY.GMNGFRVISS.N.KKLEKFDDFKG..LRLRVPLNSLFVDWAKAMNINPQSMPLSEVFTALEQKVIDGQENPYMLI.KDSGLYEVQKYIIQSN..HIF...SPGLLQISLKTWNKIPKEDQIIFEKAAKLYQ.EKEWELAIKTELEVKDYLAK.....HGNEIIVPSEAFKNDM.VNASKVLYD...S.FYKK P73589_SYNY3/60-348 HNQ...PDTSPLHKALEELWLEVFKQ..TEGEL..FVSPIPHDASIPAGDP.QAVQFITGGR......FEIVSVAGPIIDKVAPDVIGV..QNIPLLY.........QSAQDVFEIINQSLFA..EALNGSVAQY.NLTYLRNGT.FNNGMRIVTSIASKPIYKLEDFQG..LKIRIPPSNDMAMTMEALGAVPEKITMNQVFRALENGTVEAQENPSSVA.LGFKLYEVTKYLNMTN..HAW...SGYNTFFNTSFWESLSPTVQAVIKELLPVYQ.AKQIRAQEEYNQQAYQQLIG....KLGMVQ...TKPNLSQA.PQKLIEVYR...FIYSQL Q9CKT1_PASMU/28-321 IGHFL.PALSTMHNDVLVPWCQDLNTE.SKGRI..ECQLYP..SNQLGGTAGQLIDQVRNGV......ADIVWTAPGYSPGR.FKIIEA..LETPFLL.........PNVRVGNKVAWEFF....EKYAKDTEFK.QFKVL..SI.QSDGGVTFHS..NKPLNEVEDLKN..NKLRTP.TRLASQVIQALGGAAISIAPSQVAESISKGVVDGAMGAWEVV.PPTKLDEVTKYHVMPAVGEPFPTVTVLALVMNQKKYDSLPADLKAILDKHSGPALLERITVAWEKTEDNARKKVLA.....NGGVITEFGPKHTAKM.KAMTDSLTKDWIESMNKQ Q9KSI3_VIBCH/78-367 LAETW.GPNFPIFGDTTKNMAAMAEKM.SNGRL..QIRIDS..ANKHKAPL.GVFDMVKSGQ......YDMGHSASYYWKGK.VPNTLYF.TSMPFGM.........TTGEQYAWFYHGGGMELMEKVYSPHNML........SFPGGNTDVQMGGWFQKEINSVEDLQG..LKMRIP..GFAGEVLAELGAKPTNIAPGELYTSLERRTIDALEWVGPSLDLRMGFHKIAPYY.YTGWHEPA...TELQFLVNQKTWDKLPEDLREILRVAMRTAAYDMYVQSVHESGKNWVSITQE....FPDVKVKTFPAPVIKAL.REVNDRLLA...KHAAED Q9KUM7_VIBCH/37-326 LAETW.GANTPILGDAPKNMAKLAAEM.SNGRI..QIRIDS..ANKHKAPL.GVFDMVKSGQ......YDLGHSSSYYWKGK.VPNTLFF.SSMPFGM.........IATEQYAWFYYGGGMPLMEKVYAPHNLL........SFPGGNSDIQMGGWFKKEINSVDDLQG..LKMRIP..GFAGEVLAKLGAKPTNIAPGELYTSLERGTIDALEWVGPAFDLRMGFHKIAPYY.YTAWHEPG...SETQFLVNKKKWDTLPKDIQVILETAFRVAAFDMYNQAIDANATSWAAMKSE....YPDIKVRDFPPAVLAAL.RQANNELLQ...EQAASD O30835_RHOSH/36-324 LASSFPKSLDTIFGGA.EVLSKMLSEA.TDGNF..QIQVFS..AGELVPGL.QAADAVTEGT......VECCHTVGYYYWGK.DPTFALA.AAVPFSL.........SARGINAWHYHGGGIDLYNDFLAQHNIV........AFPGGNTGVQMGGWFRREINTVADMQG..LKMRVG..GFAGKVMERLGVVPQQIAGGDIYPALEKGTIDATEWVGPYDDEKLGFFKVAPYYYYPGWWEGG...PTVHFMFNKSAYEGLTPAYQSLLRTACHAAD.ANMLQLYDWKNPTAIKSLVA.....QGTQLRPFSPEILQAC.FEAANEVYA...EMEASN P74100_SYNY3/46-334 MVTSWPKSLDTLFGGA.EDFCKAIAAM.TGGKF..QITPYA..AGEIVPGL.EVLDAVQNGT......VECGHTASYYYIGK.NPALGFA.CVMPFGL.........TAQQQNAWLYAGGGLEMIQKVYSDFNII........NFTAGNTGAQMAGWFKKPVESLADLRG..LKMRIP..GLGGQVMAQLGVNVQVIPGGELFLALDRGTIDAAEWVGPYDDEKLGLNKAAKYYYYPGWWEPG...PSLDVLVNQSQWAKLPPEYQAIFQEAARSAN.LLMLSRYETFNSIALKTLLD.....GGTILKSFSPEILTVA.QETSRALLA...EFASKD Q9RBR1_9PROT/32-311 AVSAF.PEKTSQSIHF.EKFIERVNST.GKGVL..RINYVG..GPRAIPTF.EVGNAVKSGV......VDIANCHGGYYANL.FPEADA....LKLMQ.........VTPQELRR...SGGF...DAINRIWNAKGNMQYLAMIY....GYSPFHLFLNKKISKPSELAG..MKIRI..SPLYRDFLSALGVQVVNVAPGEIYTALERGVVEGYGWPIYSI.FDLGWHEKTKYRVEPG..FYN...TETSIIMNLDSYKRLTSAQRAVLDPALAYA..EGLNEDYKTINAREEKKQAD.....AGIQVIRFEGEEGREFVRRAYDEGWK...GIIARA O83923_TREPA/28-321 IASIA.PARSIWETEL.KKLSAEWSEI.TGGLV..SMKFYD..MSSLGGER.EGIRKLKSSRPGQAAPLDGAVFSCLGLSEL.APDSGIYTLSVPFLI.........QNEKDLERVLHELR....EDLDRPFRAA.GFRVI..TW.TNAGWLSFYT..RAPYASLGQLKKQTIALSSLDSSVLGTCFRICGFDIKDAPNARLAPLLKAGSIDGFLSVHLFT.WATGFYRYISYALDTK..ICP...AVIGMLISDGSWARIPSRYHDAMLQAATRVR.QRLANNLETLDRECSNNIQK.....AGVSIVHLTPQEIQEW.RTEFAADVK...RIQARL #=GR O83923_TREPA/28-321 SS EEE-S.-TTSHHHHHH.HHHHHHHHHH.TTTSE..EEEEEE..TTTTTSHH.HHHHTTS-SSTTS--S-SEEEEEHHHHHHH.STT--GGGGGSTTTS.........-SHHHHHHHHHHTH....HHHHHHHHTT.TEEEE..EE.EEEEEEEEEE..SS--SSHHHHHTSEEEESSTTHHHHHHHHHHHT-EEEE-TTSTHHHHHHTTS-SEEEEEHHHH.HHTSGGGG-SEEE-S-..-EE...EEEEEEEEHHHHTTS-GGGHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHH.....TT-EEE---HHHHHHH.HHHHHHHHH...HHHHHS Q981H4_RHILO/99-384 LGTLV.PSWDPEGRAI.EMFSSLVSQK.TGYDL..AISVFP..GGQLGPAE.TQVRALVNGI......IDIFVESLGFFQHY.SDPVKL..ASLPFCF.........DDEKHLERFSESSLFD..REVRQALRSN.SVELLNPSLKWKRGPSLVLL.SRTPILSPDDLRD..LPIRCPENDTMFRYLEIMGCRPVVVPWNEVGDALQDGKFSAMITNLSHV.VSMRFTRFARFMTALD..YRP...LDLTFAMNLQRYQILAPHIQTGLEQAAIEAA.EFCSNLLGHTCDLLPALLEE.....DGAVL...CNVGVKAW.RAKSRQVFE...E.MEKE Q9F7C9_RHIRD/29-316 LADFH.SPSHFIVEEVYEPFANAVSEA.TGGDL..TVRLYM..GGELGPGPNEQYNRAVDGV......ADIVLAMPGYTAST.FPLTLL..ADLPGVI.........DAETGTERMLANI.....DKLSQEYRRV.QLLAL.....WNNAPSFLFS.ATKPIRKLEDLAG..MKVRVP.SRNAGLVLEAWGGVPVSMPASEVYNAMQTGVIDGAMIDATAL.TGFRLEEVTNYITVGMD.TSI...SQFLMVMNLDSFQELSEEQQKAVLDAGQEAA.RNGNRAWLGVASTALKDFAG....TEGKEVITLSEEEIEKF.NAATSTVVESVIEEVEAT #=GC SS_cons EECSS.STTSHHHHHH.HHHHHHHHHH.TTTSE..EEEEEE..TTTTTTHH.HHHHHHHCTSTTS--SSSEEEEEHHHHCCT.SGGGGGGGGGSTTTSHHTT..SHHHSHHHHHHHHHHSHHH..HHHHHHHHHHHTEEEE..EEEEEEEEEEEEE.SSS--SSGGGGTTSEEEEECTSSHHHHHHHHHHTSEEEE-TGGGHHHHHHTTSSSEEEEEHHHH.HHTTGGGC-SEEEEEE..EEE...EEEEEEEEHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.....TT-EEE-GCHCHHHHH.HHHHHHHHH...HHHHHH #=GC seq_cons hupss.ussssptpus.phFschlpEc.osGcl..plplaP..supLus-t.phlctlpsGs......l-hshsusuhhssh.sPphtl..hsLPFlF.........pstptsc+.hhsuthu..cpLhpphcpp.GlpsL..ua.apNGh+phos.sp+PlpsP-Dh+G..LKlRl.tushhhphhctlGAsPpshsauElYpuLpsGslDGpENshssl.hst+haEVQKYhohos..Hsh...sshhllhspshassLst-hpphlccAspEus.phtpchhpctspphhppltc.....sGhplh.hos.cppsa.pcuhpslac...c.atcp //