HMMER3/b [3.0 | March 2010] NAME DNA_RNApol_7kD ACC PF03604.8 DESC DNA directed RNA polymerase, 7 kDa subunit LENG 32 ALPH amino RF no CS yes MAP yes DATE Sun Oct 7 04:04:10 2012 NSEQ 22 EFFN 4.471436 CKSUM 3401396454 GA 21.90 21.90; TC 21.90 21.90; NC 21.80 21.80; BM hmmbuild HMM.ann SEED.ann SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq STATS LOCAL MSV -7.2989 0.71980 STATS LOCAL VITERBI -7.9124 0.71980 STATS LOCAL FORWARD -4.4769 0.71980 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 3.02809 2.09319 3.17345 2.85801 3.87339 2.84384 3.83660 2.70791 2.36156 2.83394 4.01933 3.34186 3.71081 3.40772 2.32202 3.03112 3.28446 2.85615 5.81809 2.92622 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00781 5.25168 5.97402 0.61958 0.77255 0.00000 * 1 5.51692 6.48261 5.98435 6.00665 3.42944 5.52983 4.97246 5.47442 5.90085 4.59217 6.00115 5.65250 6.01879 5.84605 5.77422 5.49088 5.82272 5.39856 5.07541 0.10887 1 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00781 5.25168 5.97402 0.61958 0.77255 0.48576 0.95510 2 3.02308 4.84113 2.53834 3.19426 3.99738 3.96363 4.20474 1.53509 2.57679 2.23742 3.93985 2.54204 4.34639 3.48136 3.55217 3.19815 2.86412 2.47064 5.41450 4.16079 2 - B 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00781 5.25168 5.97402 0.61958 0.77255 0.48576 0.95510 3 4.90863 0.05396 6.25798 6.30199 6.38476 5.07794 6.76442 6.10553 6.29442 5.73816 6.92868 6.17188 5.81248 6.57433 6.14995 5.17444 5.45323 5.67141 7.23362 6.61739 3 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00781 5.25168 5.97402 0.61958 0.77255 0.48576 0.95510 4 1.55507 5.00446 3.79358 3.25472 4.43364 1.35709 4.34723 3.82834 3.22517 3.48770 2.93203 3.67699 4.36026 3.56085 2.98383 2.59617 2.85528 3.50262 5.78047 4.50597 4 - S 2.68635 4.42242 2.77536 2.73140 3.46371 2.40404 3.72511 3.29371 2.67675 2.69372 4.24707 2.90363 2.73756 3.18163 2.89818 2.37904 2.77536 2.98535 4.58494 3.61520 0.12150 2.19048 5.97402 1.01318 0.45109 0.48576 0.95510 5 3.05889 5.58084 2.03943 1.47469 4.92460 2.56069 4.00516 4.41393 2.25007 3.88450 4.62481 2.95673 4.20421 2.75258 2.39257 3.01417 3.29284 3.97135 6.01044 4.59286 8 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00781 5.25168 5.97402 0.61958 0.77255 0.48576 0.95510 6 4.90863 0.05396 6.25798 6.30199 6.38476 5.07794 6.76442 6.10553 6.29442 5.73816 6.92868 6.17188 5.81248 6.57433 6.14995 5.17444 5.45323 5.67141 7.23362 6.61739 9 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00781 5.25168 5.97402 0.61958 0.77255 0.48576 0.95510 7 2.46419 5.39206 2.97293 2.74965 4.69375 1.39326 3.01501 4.14654 2.50852 3.68311 4.45509 3.00131 4.19509 3.11856 3.24803 2.55379 3.24580 2.57554 5.86343 4.48378 10 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00781 5.25168 5.97402 0.61958 0.77255 0.48576 0.95510 8 1.95835 5.41146 2.41863 2.71928 4.72102 3.77822 3.40639 3.29562 2.19716 3.70148 3.31435 3.26090 4.17079 2.42795 3.20566 2.28265 2.44391 3.22473 5.86602 4.47758 11 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00781 5.25168 5.97402 0.61958 0.77255 0.48576 0.95510 9 2.99176 5.50037 2.12464 1.86725 4.84470 3.76393 3.95186 4.32998 2.04223 3.05801 4.54145 3.23164 2.70762 3.04869 2.31818 2.66168 2.73289 3.89066 5.93318 4.52286 12 - B 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00781 5.25168 5.97402 0.61958 0.77255 0.48576 0.95510 10 3.04686 4.50002 4.59572 4.00565 3.03967 4.16476 3.47291 2.49360 3.87150 2.46782 3.61590 2.23170 4.53276 4.07853 4.02417 3.45622 2.49363 1.16861 5.11705 3.92681 13 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00781 5.25168 5.97402 0.61958 0.77255 0.48576 0.95510 11 2.98837 5.48532 2.84774 1.97639 4.82464 3.76401 3.95182 4.30657 2.68876 2.97426 4.52752 2.74783 3.08521 2.79641 2.08960 2.05783 2.74401 2.90166 5.92144 4.51397 14 - - 2.68623 4.42230 2.77525 2.73128 3.46359 2.40518 3.72500 3.29359 2.67746 2.69280 4.24695 2.90352 2.73745 3.18152 2.89806 2.37892 2.77525 2.98524 4.58482 3.61508 0.11586 2.23624 5.97402 0.17537 1.82727 0.48576 0.95510 12 3.74120 5.06511 2.99158 4.94643 3.81015 5.00152 5.34605 1.10931 4.80889 1.04297 2.91706 5.09276 5.25273 4.90492 4.87720 4.33766 3.96810 2.76393 5.71833 4.61961 16 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00781 5.25168 5.97402 0.61958 0.77255 0.48576 0.95510 13 2.99057 5.49551 2.86536 2.31380 4.83832 3.19704 3.95168 2.86320 1.51906 3.79963 4.53692 3.23228 3.28806 2.59108 2.93509 2.01118 3.22173 3.88497 5.92931 4.51993 17 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00781 5.25168 5.97402 0.61958 0.77255 0.48576 0.95510 14 2.55958 5.49075 2.75181 2.68386 4.83258 3.76282 3.31026 3.25838 2.27612 3.79462 4.53228 2.64895 2.33571 2.31927 2.36743 2.37640 3.21904 3.26108 5.92535 4.51642 18 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00781 5.25168 5.97402 0.61958 0.77255 0.48576 0.95510 15 2.99959 5.48924 3.25145 2.31309 4.82809 1.77319 3.95971 4.30731 1.98401 3.04678 4.53264 2.33659 4.16709 3.05903 2.63583 2.71982 2.63983 3.87677 5.92465 4.52077 19 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.04589 5.25168 3.22845 0.61958 0.77255 0.48576 0.95510 16 2.17635 5.87179 1.13214 1.63916 5.22081 3.86681 4.24708 4.72401 3.11019 4.20216 4.97835 3.33780 4.38436 3.37394 3.64992 2.84667 2.78305 4.27787 6.34394 4.88796 20 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00812 5.21390 5.93624 0.61958 0.77255 0.61192 0.78156 17 2.41506 4.94872 3.60568 3.05315 4.16136 3.87993 4.14546 3.11621 3.03432 3.21392 4.07159 2.85157 1.50144 3.03760 3.45529 2.33773 3.23825 2.17765 5.52911 4.25006 21 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00812 5.21390 5.93624 0.61958 0.77255 0.41426 1.08126 18 4.08153 5.24123 6.24677 5.80526 4.55466 5.81403 6.65405 0.76492 5.78674 2.05102 4.24788 5.98559 5.96385 6.01433 5.95155 5.28398 4.33965 1.15901 6.81421 5.62488 22 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00781 5.25168 5.97402 0.61958 0.77255 0.48576 0.95510 19 3.57890 5.76801 4.04787 3.34057 5.18179 4.27498 4.22851 2.78023 2.06698 3.99697 4.83463 3.77568 4.62294 2.60071 0.80065 3.57228 2.84652 4.20317 6.07454 4.86858 23 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00781 5.25168 5.97402 0.61958 0.77255 0.48576 0.95510 20 4.90863 0.05396 6.25798 6.30199 6.38476 5.07794 6.76442 6.10553 6.29442 5.73816 6.92868 6.17188 5.81248 6.57433 6.14995 5.17444 5.45323 5.67141 7.23362 6.61739 24 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00781 5.25168 5.97402 0.61958 0.77255 0.48576 0.95510 21 3.03803 5.53222 3.29392 2.73144 4.88572 3.17134 3.31058 4.36269 1.39732 3.83192 4.57424 2.74771 3.39563 2.54875 1.97451 3.00076 2.64836 3.92817 5.95161 4.55660 25 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.03709 5.25168 3.46819 0.61958 0.77255 0.48576 0.95510 22 2.97800 5.47363 2.86672 1.39625 4.81203 3.75187 2.97122 3.23836 2.45561 3.77605 4.51620 2.25832 4.14635 3.03991 3.17129 2.55352 2.84794 3.86072 5.91014 3.53703 26 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00804 5.22263 5.94498 0.61958 0.77255 0.42860 1.05389 23 4.90863 0.05396 6.25798 6.30199 6.38476 5.07794 6.76442 6.10553 6.29442 5.73816 6.92868 6.17188 5.81248 6.57433 6.14995 5.17444 5.45323 5.67141 7.23362 6.61739 27 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00781 5.25168 5.97402 0.61958 0.77255 0.48576 0.95510 24 3.32832 5.30454 4.00121 3.91683 5.41274 0.38531 2.96253 5.06214 4.12982 4.67592 5.51388 4.17792 4.71406 4.46173 4.42885 3.47672 2.94435 4.42715 6.72472 5.43364 28 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00781 5.25168 5.97402 0.61958 0.77255 0.48576 0.95510 25 2.74685 2.48498 4.62451 4.05016 1.80254 4.23327 1.84347 3.06574 3.92262 2.79798 3.73047 4.21770 4.60534 4.12566 4.08545 2.60347 3.37915 2.87297 5.01229 2.23156 29 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00781 5.25168 5.97402 0.61958 0.77255 0.48576 0.95510 26 4.24192 6.24450 4.76768 3.90329 5.94074 4.69290 4.42748 5.15841 2.14629 4.44264 5.35229 2.87246 5.01647 3.55399 0.41912 4.20078 4.32089 4.85770 6.35139 5.32064 30 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00781 5.25168 5.97402 0.61958 0.77255 0.48576 0.95510 27 3.63900 4.92288 5.62694 5.09007 4.19471 5.01727 5.52496 0.83648 4.95617 2.29407 4.05596 5.17060 5.32662 5.15156 5.04952 2.44480 3.88995 1.46217 5.98054 4.78409 31 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00781 5.25168 5.97402 0.61958 0.77255 0.48576 0.95510 28 4.16656 5.40058 6.16372 5.57288 2.86159 5.52185 5.83609 2.17717 5.41895 0.74591 2.36638 5.69950 5.61788 5.31509 5.35545 4.89467 4.37563 1.72887 5.91829 4.93320 32 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00781 5.25168 5.97402 0.61958 0.77255 0.48576 0.95510 29 3.68737 3.41762 5.43457 4.92815 1.94087 4.77169 4.52742 3.35846 4.72275 2.55559 2.71368 4.78103 5.09902 4.75325 4.70426 4.09996 3.91400 3.24474 4.76770 0.76806 33 - B 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00781 5.25168 5.97402 0.61958 0.77255 0.48576 0.95510 30 4.98140 6.56815 5.24778 4.78358 6.32648 5.07012 5.41180 5.96927 0.11132 5.27301 6.29563 5.08963 5.58594 4.63201 3.78286 5.02983 5.19500 5.64486 6.89668 6.05177 34 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00781 5.25168 5.97402 0.61958 0.77255 0.48576 0.95510 31 2.50671 5.52142 3.29371 2.06721 4.87051 3.80355 3.97480 4.34558 1.27385 3.81996 3.71926 3.27335 3.04490 2.81426 2.33821 2.99935 3.26260 3.91495 5.94402 4.55010 35 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00781 5.25168 5.97402 0.61958 0.77255 0.48576 0.95510 32 5.23005 6.62563 5.82604 5.27727 6.38300 5.21061 5.72600 6.22182 3.99119 5.48220 6.55653 5.50361 5.75402 5.00323 0.08313 5.34218 5.48019 5.89708 6.98460 6.21897 36 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00527 5.24913 * 0.61958 0.77255 0.00000 * //