HMMER3/b [3.0 | March 2010] NAME Cyclotide ACC PF03784.8 DESC Cyclotide family LENG 30 ALPH amino RF no CS yes MAP yes DATE Sat Oct 6 01:08:45 2012 NSEQ 30 EFFN 3.870850 CKSUM 1368903335 GA 20.30 20.30; TC 20.50 20.50; NC 17.20 19.80; BM hmmbuild HMM.ann SEED.ann SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq STATS LOCAL MSV -7.7241 0.71988 STATS LOCAL VITERBI -8.2210 0.71988 STATS LOCAL FORWARD -4.0708 0.71988 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 2.90265 1.70563 3.46914 2.77117 3.50982 2.53942 4.38040 2.89550 3.03523 2.90239 4.23392 3.08767 3.28529 3.75697 3.54150 2.61821 2.66101 2.76262 5.19834 3.54565 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00881 5.13157 5.85391 0.61958 0.77255 0.00000 * 1 2.89121 5.59893 2.67058 2.48036 4.93739 1.22801 4.04828 4.42311 2.60379 3.91220 4.67204 2.91341 4.22111 3.16192 3.35163 2.02106 3.08683 3.99244 6.05631 4.63349 1 - B 2.68632 4.42239 2.77465 2.73137 3.46368 2.40527 3.72508 3.29368 2.67755 2.69369 4.24704 2.90361 2.73645 3.18160 2.89815 2.37871 2.77533 2.98532 4.58491 3.61517 0.17201 1.86332 5.85391 0.68024 0.70623 0.48576 0.95510 2 2.96135 4.77513 5.41839 4.86134 3.98113 4.79552 5.24629 0.95105 4.71485 1.77539 3.86927 4.93672 5.11258 4.89231 4.79567 4.14246 2.23364 1.93924 5.71603 4.53211 4 - C 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00881 5.13157 5.85391 0.61958 0.77255 0.48576 0.95510 3 2.57038 4.88433 3.72357 3.23046 2.17719 3.85153 4.28488 3.58106 3.22244 3.26206 4.13310 3.64830 1.21396 2.77133 3.61081 2.55942 3.28450 3.29981 5.56930 4.29490 5 - C 2.68609 4.42235 2.77529 2.73133 3.46363 2.40522 3.72504 3.29324 2.67750 2.69365 4.24699 2.90325 2.73749 3.18156 2.89810 2.37896 2.77510 2.98446 4.58487 3.61513 0.24455 1.54142 5.85391 0.11091 2.25398 0.48576 0.95510 4 4.68315 0.06746 6.08572 6.11700 6.16362 4.90105 6.58165 5.81064 6.08658 5.48871 6.67387 5.96781 5.64012 6.37108 5.96007 4.94793 5.22702 5.39637 7.07060 6.40084 7 - C 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00881 5.13157 5.85391 0.61958 0.77255 0.48576 0.95510 5 1.72474 5.02054 4.86072 4.85220 5.77276 0.41040 5.76354 5.27479 5.04131 4.97705 5.75610 4.55389 4.64719 5.16614 5.13563 3.31769 3.69225 4.40404 7.05426 6.03454 8 - C 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00881 5.13157 5.85391 0.61958 0.77255 0.48576 0.95510 6 4.79485 6.64920 3.89307 0.11765 6.29719 4.68419 5.57681 6.13897 4.71527 5.54467 6.63630 4.51157 5.36943 4.87847 5.14609 4.72981 5.15520 5.73017 7.12377 6.15316 9 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00881 5.13157 5.85391 0.61958 0.77255 0.48576 0.95510 7 2.99125 4.91828 4.76620 4.60966 5.51116 3.70062 5.50543 4.97433 4.63478 4.68082 5.46765 4.39542 4.54155 4.85305 4.80729 0.76383 1.08780 4.20229 6.85089 5.72992 10 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00881 5.13157 5.85391 0.61958 0.77255 0.48576 0.95510 8 4.68315 0.06746 6.08572 6.11700 6.16362 4.90105 6.58165 5.81064 6.08658 5.48871 6.67387 5.96781 5.64012 6.37108 5.96007 4.94793 5.22702 5.39637 7.07060 6.40084 11 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00881 5.13157 5.85391 0.61958 0.77255 0.48576 0.95510 9 2.22685 4.43680 4.68472 4.09073 1.85419 4.15072 4.47914 2.57328 3.93290 2.61338 3.55457 4.21385 4.51874 4.12436 2.70943 3.45169 2.99357 1.36286 5.07360 3.88827 12 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00881 5.13157 5.85391 0.61958 0.77255 0.48576 0.95510 10 2.97460 4.35944 4.87349 4.26259 2.55935 2.94066 4.46678 2.38424 3.45766 2.22182 2.94606 4.27770 4.50111 4.20505 4.09273 3.44525 2.47978 2.10396 2.80982 2.01221 13 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00881 5.13157 5.85391 0.61958 0.77255 0.48576 0.95510 11 3.30696 4.67974 5.10468 4.52741 2.80825 1.63927 4.83199 1.18199 4.36101 1.96341 3.61483 4.60699 4.83474 4.50988 4.43280 3.81864 3.54525 2.59073 5.30781 4.10258 14 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00881 5.13157 5.85391 0.61958 0.77255 0.48576 0.95510 12 3.02097 5.25870 3.46010 2.97517 4.85849 3.24977 4.20006 4.30836 1.89267 3.85498 4.63441 3.45758 1.24057 3.33373 3.38144 2.47252 2.30544 3.86752 6.02730 4.68483 15 - S 2.68622 4.42229 2.77524 2.73127 3.46358 2.40517 3.72499 3.29358 2.67745 2.69359 4.24694 2.90351 2.73744 3.18150 2.89805 2.37891 2.77524 2.98438 4.58481 3.61507 0.10507 2.33439 5.85391 0.20558 1.68296 0.48576 0.95510 13 3.90911 0.27098 5.75219 5.57743 2.87223 4.57466 5.43957 4.05794 5.40322 3.68057 4.96530 5.24371 5.26774 5.52511 5.37238 4.19985 4.37922 3.90090 5.73292 4.19311 17 - - 2.68628 4.42074 2.77529 2.73133 3.46363 2.40522 3.72504 3.29364 2.67750 2.69364 4.24699 2.90356 2.73749 3.18156 2.89810 2.37896 2.77404 2.98528 4.58487 3.61513 0.80658 1.54557 1.07755 0.11130 2.25068 0.48576 0.95510 14 3.03400 4.39088 4.91142 4.32167 2.18077 4.21502 4.45021 1.72063 4.13094 1.95549 3.34664 4.33390 4.54851 4.24481 4.15732 3.53288 3.26448 1.99800 4.86528 1.94292 19 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01334 4.71974 5.44209 0.61958 0.77255 1.22086 0.34952 15 2.66734 4.59712 4.15871 3.91262 4.91770 3.38569 4.89880 4.32581 3.92888 4.04567 4.86854 3.91142 4.18045 4.20508 4.18049 1.47052 0.79793 3.70747 6.26922 5.09008 20 - G 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01334 4.71974 5.44209 0.61958 0.77255 0.20393 1.69020 16 1.91247 4.90731 3.53120 2.31664 2.93590 3.05614 3.29619 3.13705 2.95048 3.13894 3.99610 2.90963 4.22699 3.28347 3.37562 2.66040 3.00530 3.20587 4.08928 2.25480 21 - G 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00881 5.13157 5.85391 0.61958 0.77255 0.48576 0.95510 17 2.24515 4.55463 4.10320 2.82947 3.67412 4.00797 4.28685 2.50684 3.45537 2.15004 3.66564 3.33999 3.84552 3.72448 3.73767 3.27282 1.82786 1.78951 5.15633 3.94572 22 - C 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00881 5.13157 5.85391 0.61958 0.77255 0.48576 0.95510 18 2.42420 4.41438 4.70752 4.11007 3.09318 4.14040 4.46423 2.08910 3.94893 1.68459 3.52593 3.61110 1.75183 4.12783 4.04799 3.44130 3.23055 2.20789 5.04118 3.85860 23 - C 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00881 5.13157 5.85391 0.61958 0.77255 0.48576 0.95510 19 3.52348 5.70515 3.19875 3.19338 5.61597 0.46818 4.78645 5.19812 3.74604 4.72355 5.58782 2.62453 4.63756 3.11225 4.18491 3.54370 3.94674 4.62551 6.81150 5.41683 24 - T 2.68620 4.42227 2.77521 2.73125 3.46356 2.40515 3.72496 3.29356 2.67743 2.69357 4.24692 2.90348 2.73741 3.18148 2.89803 2.37889 2.77490 2.98520 4.58479 3.61505 0.05174 3.04593 5.85391 0.32144 1.29136 0.48576 0.95510 20 4.68315 0.06746 6.08572 6.11700 6.16362 4.90105 6.58165 5.81064 6.08658 5.48871 6.67387 5.96781 5.64012 6.37108 5.96007 4.94793 5.22702 5.39637 7.07060 6.40084 26 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00881 5.13157 5.85391 0.61958 0.77255 0.48576 0.95510 21 3.01977 5.15428 3.47976 2.96328 4.50384 3.81362 4.13021 3.92924 2.39130 3.53791 4.36043 3.44961 4.26230 3.29458 3.32024 1.21342 1.67984 3.58983 5.76868 3.59966 27 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00881 5.13157 5.85391 0.61958 0.77255 0.48576 0.95510 22 4.68315 0.06746 6.08572 6.11700 6.16362 4.90105 6.58165 5.81064 6.08658 5.48871 6.67387 5.96781 5.64012 6.37108 5.96007 4.94793 5.22702 5.39637 7.07060 6.40084 28 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.11662 5.13157 2.26172 0.61958 0.77255 0.48576 0.95510 23 2.90691 5.41735 2.19737 2.30405 4.76212 3.66890 3.86221 4.24769 1.56377 3.72152 4.45932 2.79745 4.06771 2.96001 2.50944 2.43672 2.52665 3.80808 5.84866 4.43775 29 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.13973 5.02476 2.08883 0.61958 0.77255 0.76779 0.62369 24 2.44455 5.62587 1.49244 2.62882 5.07029 3.67207 4.12510 4.57332 3.01200 4.06401 4.84847 1.66464 4.22123 3.26058 3.55260 1.89534 3.43859 4.11343 6.21194 4.76165 30 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01117 4.89620 5.61855 0.61958 0.77255 0.26108 1.47063 25 2.94108 5.41725 3.20356 2.64656 3.35273 3.71861 3.41050 4.22596 1.47225 3.71603 4.46164 2.77303 3.62113 2.83479 2.36377 2.28288 2.54792 3.80173 5.85565 4.45544 31 - T 2.68653 4.42260 2.77486 2.73158 3.46389 2.40500 3.72529 3.29389 2.67776 2.69390 4.24725 2.90382 2.73630 3.18181 2.89804 2.37875 2.77554 2.98553 4.57846 3.61380 0.40806 1.10204 5.85391 0.80656 0.59130 0.48576 0.95510 26 3.98592 5.16542 6.10175 5.62656 4.27261 5.62323 6.30490 1.85536 5.56838 1.50600 3.99488 5.79198 5.77597 5.71854 5.67847 5.06448 4.23663 0.67319 6.46996 5.33621 35 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00881 5.13157 5.85391 0.61958 0.77255 0.48576 0.95510 27 4.68315 0.06746 6.08572 6.11700 6.16362 4.90105 6.58165 5.81064 6.08658 5.48871 6.67387 5.96781 5.64012 6.37108 5.96007 4.94793 5.22702 5.39637 7.07060 6.40084 36 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00881 5.13157 5.85391 0.61958 0.77255 0.48576 0.95510 28 2.73985 4.78270 3.73466 3.17101 3.94013 3.91209 4.15838 3.31154 2.25843 3.00906 3.00049 3.60432 4.30009 3.44133 3.46972 2.92269 2.20764 3.07226 5.35468 1.39699 37 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.06780 5.13157 2.81936 0.61958 0.77255 0.48576 0.95510 29 2.96411 5.08908 3.41730 2.84901 3.04251 3.80354 3.08180 3.71890 1.91536 2.23093 4.16557 3.03758 4.18892 3.15760 1.76257 3.01726 3.19171 3.41590 5.57276 3.29097 38 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00935 5.07312 5.79546 0.61958 0.77255 0.39358 1.12282 30 3.43622 5.86520 2.17376 2.82257 5.25470 3.86746 4.38676 3.58919 3.33993 4.29102 5.11580 0.66960 4.45791 3.54623 3.89224 2.95095 3.73329 4.32926 6.45603 4.99624 39 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00594 5.12870 * 0.61958 0.77255 0.00000 * //