HMMER3/b [3.0 | March 2010] NAME RNA_pol_Rpb1_R ACC PF05001.8 DESC RNA polymerase Rpb1 C-terminal repeat LENG 14 ALPH amino RF no CS no MAP yes DATE Sun Oct 7 21:53:53 2012 NSEQ 99 EFFN 99.000000 CKSUM 2810447650 GA 20.30 6.20; TC 20.50 6.20; NC 20.20 6.10; BM hmmbuild HMM.ann SEED.ann SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq STATS LOCAL MSV -6.4650 0.73953 STATS LOCAL VITERBI -6.6876 0.73953 STATS LOCAL FORWARD -3.3550 0.73953 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 2.57219 6.41077 4.36051 4.19040 3.33581 2.87097 4.48419 4.86087 3.80379 3.96710 4.67906 3.28689 1.52702 3.76882 3.83173 1.39658 2.56933 3.81502 5.32670 2.49999 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00041 8.18624 8.90859 0.61958 0.77255 0.00000 * 1 2.68025 7.91118 6.92492 3.76206 8.40202 3.97770 7.89424 7.91218 6.85061 7.49849 8.24100 2.05378 7.33434 7.10116 4.40717 0.34880 4.56489 3.60665 9.62928 8.39011 1 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00041 8.18624 8.90859 0.61958 0.77255 0.48576 0.95510 2 1.92315 7.65816 8.40536 8.21373 7.75191 2.82861 8.44821 4.29256 8.00277 4.65975 5.02930 7.50594 0.31329 8.05692 7.92833 3.83379 6.39364 4.93737 9.23505 8.13233 2 - - 2.68749 4.42356 2.77650 2.73254 3.46485 2.39202 3.72625 3.29485 2.67872 2.69486 4.24821 2.90477 2.73870 3.18277 2.89932 2.38018 2.77650 2.98649 4.58608 3.61634 0.06829 2.71994 8.90859 0.69151 0.69479 0.48576 0.95510 3 1.23897 7.60313 4.30482 5.01980 3.72617 3.15561 6.25295 6.33048 4.38620 4.49143 4.17439 3.51708 4.55940 3.32131 4.64558 1.73637 1.25894 3.62848 8.07491 4.90333 5 - - 2.68660 4.42267 2.77561 2.73165 3.46396 2.40555 3.70809 3.29396 2.67783 2.69397 4.24732 2.90388 2.73781 3.18188 2.89843 2.37929 2.77561 2.98560 4.58519 3.61545 0.04340 3.16205 8.90859 0.03011 3.51791 0.48576 0.95510 4 3.78347 7.23606 5.96198 5.39963 6.40788 4.33142 4.83706 5.78642 5.37136 4.67605 4.64404 4.45750 6.62062 4.76344 3.17588 0.23632 3.21846 4.13216 7.79167 4.52442 7 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00041 8.18624 8.90859 0.61958 0.77255 0.48576 0.95510 5 2.65482 7.83653 8.11180 8.00053 8.69849 4.01492 4.56713 8.21360 7.94832 7.88782 8.61452 3.85889 0.20763 8.08784 4.91845 3.39124 4.44548 4.41494 10.01877 8.99006 8 - - 2.69208 4.42815 2.76740 2.73713 3.46944 2.38202 3.72685 3.29944 2.68331 2.68682 4.25280 2.90937 2.73010 3.18534 2.90391 2.38371 2.78110 2.98308 4.59067 3.62093 0.18324 1.78799 8.90859 1.26203 0.33279 0.48576 0.95510 6 1.67094 7.70008 4.45162 3.99713 2.25247 2.21588 6.21555 4.67818 3.48296 4.26606 3.94031 2.29117 4.51581 2.07800 3.87468 2.47106 2.76385 3.51570 3.21759 4.10942 14 - - 2.68842 4.42449 2.77744 2.73347 3.46578 2.39386 3.72719 3.29578 2.67965 2.69579 4.24914 2.90571 2.73964 3.18371 2.90025 2.37018 2.77744 2.98743 4.58701 3.61727 0.13736 2.09390 5.27185 0.60416 0.79083 0.48576 0.95510 7 5.94755 7.29080 7.82396 7.27279 2.89427 4.21296 3.42359 5.74044 7.05330 2.34163 4.72876 3.02077 7.42007 7.12460 7.03349 4.13503 6.17783 3.61794 7.34569 0.37516 17 - - 2.68821 4.42428 2.77723 2.73327 3.46557 2.39594 3.72698 3.29557 2.67944 2.69558 4.24893 2.88710 2.73943 3.18350 2.90004 2.38090 2.77723 2.98722 4.58680 3.61706 0.10856 2.27553 8.90357 0.69208 0.69421 0.64459 0.74418 8 3.35039 7.74661 4.41862 3.56550 7.09214 1.92132 6.19542 6.57845 4.35553 6.05209 5.00134 3.95811 6.40186 4.07038 4.25901 0.42671 3.54574 4.63380 8.17902 4.81514 20 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00237 8.18253 6.16982 0.61958 0.77255 0.36705 1.18016 9 3.55931 7.19138 7.82037 7.28534 6.40620 2.51812 7.47590 4.06509 7.06753 4.17440 3.69583 7.15608 0.24000 4.58384 7.06928 6.15973 6.03567 3.71960 7.98700 6.82394 21 - - 2.68893 4.42501 2.77795 2.73399 3.46629 2.40788 3.72770 3.27181 2.68016 2.69630 4.24965 2.90622 2.74015 3.18422 2.90076 2.37174 2.77795 2.98794 4.58752 3.58417 0.12242 2.37974 3.78773 1.09228 0.40865 0.41494 1.07993 10 2.55805 7.67165 5.49701 4.31734 4.42477 4.87506 6.19666 6.46008 3.79171 5.96612 4.05208 3.72912 4.89148 3.60291 2.28060 1.57311 0.92385 2.82022 4.36213 6.72450 25 - - 2.68662 4.42269 2.77563 2.73167 3.46398 2.40557 3.72538 3.29398 2.67785 2.69399 4.24734 2.90391 2.73783 3.17627 2.89845 2.37931 2.77563 2.98562 4.56518 3.61547 0.04666 3.09112 8.88586 0.02875 3.56338 0.16476 1.88450 11 4.04445 7.83521 8.51047 8.57264 8.84582 3.79388 8.96461 8.38363 8.43911 4.33068 8.77577 7.61476 7.52917 4.12774 8.32145 0.23565 1.98838 7.33212 10.17905 9.22773 27 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00041 8.18624 8.90859 0.61958 0.77255 0.48576 0.95510 12 3.40417 8.07512 4.07414 6.82650 8.79288 6.67740 8.29403 8.33342 7.53652 4.78421 8.72446 4.70325 0.14443 7.58253 4.62761 4.20423 3.30147 7.43254 10.07860 8.86998 28 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00041 8.18624 8.90859 0.61958 0.77255 0.48576 0.95510 13 2.41410 7.75139 3.89272 3.33621 3.22232 1.70648 2.92737 6.58478 1.89052 6.05726 6.79168 2.45284 6.40428 3.82598 3.43978 1.75705 2.49330 3.88548 8.18325 5.14332 29 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00041 8.18624 8.90859 0.61958 0.77255 0.48576 0.95510 14 4.43254 7.01822 3.95668 5.84092 1.33765 3.74919 3.71399 4.62041 5.78008 5.22299 4.42356 4.16215 3.31828 3.50415 6.09229 3.42575 5.61453 5.28451 5.35792 0.70437 30 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00028 8.18610 * 0.61958 0.77255 0.00000 * //