HMMER3/b [3.0 | March 2010] NAME PsbM ACC PF05151.7 DESC Photosystem II reaction centre M protein (PsbM) LENG 31 ALPH amino RF no CS yes MAP yes DATE Thu Oct 4 11:20:07 2012 NSEQ 19 EFFN 5.673096 CKSUM 2882622069 GA 21.10 21.10; TC 21.40 21.40; NC 20.80 20.50; BM hmmbuild HMM.ann SEED.ann SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq STATS LOCAL MSV -6.9819 0.71984 STATS LOCAL VITERBI -7.0573 0.71984 STATS LOCAL FORWARD -4.3514 0.71984 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 2.43942 5.33285 4.21824 3.44797 2.48299 3.27579 5.09533 2.25407 3.75916 1.76456 3.26914 3.29615 3.27965 3.81747 4.43022 2.83459 2.56169 2.19034 5.89747 3.28774 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00637 5.45580 6.17814 0.61958 0.77255 0.00000 * 1 2.63055 5.45460 5.55026 5.37519 4.80418 4.48433 5.96993 3.92584 5.15427 3.35554 0.28508 5.15675 5.22838 5.43461 5.22036 4.00984 4.21815 3.83039 6.64992 5.51070 1 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00637 5.45580 6.17814 0.61958 0.77255 0.48576 0.95510 2 3.76613 6.42216 2.44420 0.66051 5.72041 4.11161 4.59170 5.25877 3.55609 4.70818 5.51556 2.30602 3.13538 2.54505 4.14938 3.64741 4.03954 4.79477 6.84309 5.32430 2 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00637 5.45580 6.17814 0.61958 0.77255 0.48576 0.95510 3 3.70577 5.26182 5.80321 5.54104 5.01055 4.68664 6.20272 2.92575 5.42234 3.60902 4.82018 5.32410 5.37170 5.67428 5.52341 4.18001 1.43792 0.54801 6.88195 5.68103 3 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00637 5.45580 6.17814 0.61958 0.77255 0.48576 0.95510 4 3.37906 5.38672 4.17340 4.07229 5.83171 4.01786 5.39390 5.34572 4.42007 4.96369 5.74617 0.49605 4.80819 4.63884 4.77595 2.18957 2.15799 4.59926 7.10255 5.85835 4 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00637 5.45580 6.17814 0.61958 0.77255 0.48576 0.95510 5 3.10231 5.34691 2.42222 2.61360 4.59740 3.92328 4.12512 1.83632 2.91455 3.61086 4.41396 2.23512 4.31423 2.90388 3.38378 2.64613 2.33477 2.58388 5.84077 3.37306 5 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00637 5.45580 6.17814 0.61958 0.77255 0.48576 0.95510 6 2.42663 5.59389 6.17733 5.63974 1.93592 5.51198 5.75092 3.22352 5.47564 0.50277 3.73711 5.70248 5.70576 5.39545 5.42985 4.89888 4.53609 3.43694 5.87120 4.66825 6 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00637 5.45580 6.17814 0.61958 0.77255 0.48576 0.95510 7 0.91201 5.29702 5.39213 5.41227 6.14845 0.71905 6.18451 5.67577 5.54179 5.36910 6.12340 4.92780 4.94795 5.62015 5.56201 3.60314 3.98187 4.73416 7.42693 6.45220 7 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00637 5.45580 6.17814 0.61958 0.77255 0.48576 0.95510 8 4.39936 5.62282 6.01096 5.61413 0.64608 5.41989 4.79083 3.73402 5.40726 1.92902 4.34514 5.31115 5.68086 5.29512 5.31976 4.77649 4.61572 2.35784 4.92236 2.15375 8 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00637 5.45580 6.17814 0.61958 0.77255 0.48576 0.95510 9 2.68989 4.69990 5.30828 4.70809 3.81469 4.55853 4.91684 1.40380 4.51084 1.46984 2.99104 4.71519 4.90784 4.65100 4.53531 2.73536 3.58138 1.69344 5.40128 4.22506 9 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00637 5.45580 6.17814 0.61958 0.77255 0.48576 0.95510 10 0.26881 5.27091 5.53336 5.36540 5.19906 4.27814 5.99922 2.60197 5.24710 3.96596 5.13276 5.02305 5.07407 5.46559 5.32242 3.78410 4.02027 3.54550 6.87494 5.70999 10 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00637 5.45580 6.17814 0.61958 0.77255 0.48576 0.95510 11 3.26113 5.09092 5.24778 4.94217 5.17053 4.04048 5.61970 4.26480 4.85129 4.22817 5.12663 4.70699 4.82728 5.05399 4.99670 1.39259 0.94715 1.59986 6.63680 5.49156 11 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00637 5.45580 6.17814 0.61958 0.77255 0.48576 0.95510 12 1.40840 5.35844 5.99124 5.44808 4.06187 5.32550 5.81769 1.94325 5.29095 0.80657 3.85725 5.53810 5.58999 5.34502 5.31628 4.70662 4.30151 2.91392 6.08392 5.01573 12 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00637 5.45580 6.17814 0.61958 0.77255 0.48576 0.95510 13 5.36480 6.46654 6.60829 6.40531 4.54130 5.93191 6.75139 3.90737 6.29359 0.09431 4.36426 6.64744 6.26105 6.24487 6.16872 6.06359 5.62974 4.27182 6.68400 5.72720 13 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00637 5.45580 6.17814 0.61958 0.77255 0.48576 0.95510 14 3.69221 5.09016 5.47413 4.95960 0.63108 2.54076 4.97878 3.25400 4.78158 2.19514 3.99757 4.93111 5.16995 4.88268 4.81973 4.13416 3.95731 2.60057 5.32054 3.88703 14 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00637 5.45580 6.17814 0.61958 0.77255 0.48576 0.95510 15 4.05185 5.25584 6.17313 5.69087 4.63675 5.64138 6.31837 1.04134 5.61800 2.03576 4.39445 5.80867 5.87317 5.84745 5.74743 5.05756 2.46457 1.05428 6.65690 5.44426 15 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00637 5.45580 6.17814 0.61958 0.77255 0.48576 0.95510 16 2.38499 4.56771 5.01069 4.40651 2.49084 2.53557 4.65997 1.89218 4.21922 1.27848 3.68481 4.44876 4.69124 4.37381 4.27214 2.61081 3.40489 2.80690 5.19263 4.01362 16 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00637 5.45580 6.17814 0.61958 0.77255 0.48576 0.95510 17 4.18567 5.35689 6.34248 5.89518 2.78192 5.87600 6.63851 0.94588 5.86338 3.10196 4.43214 6.04569 6.05702 6.09759 6.01942 5.33067 4.44443 0.84209 6.85743 5.61023 17 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00637 5.45580 6.17814 0.61958 0.77255 0.48576 0.95510 18 3.52256 5.43488 5.00762 5.03417 6.09500 4.16758 6.05404 5.74768 5.28150 5.39140 6.18774 4.86878 0.25298 5.45644 5.40213 2.32096 4.10531 4.84981 7.35280 6.28661 18 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00637 5.45580 6.17814 0.61958 0.77255 0.48576 0.95510 19 2.34407 4.84280 4.68525 4.15636 4.18910 4.13516 4.83747 3.47612 4.06378 3.26595 3.04829 4.31988 4.68017 4.30761 4.29405 2.21848 0.86906 2.24458 5.67816 4.48481 19 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00637 5.45580 6.17814 0.61958 0.77255 0.48576 0.95510 20 1.56614 4.64404 5.04936 4.45840 3.77861 2.79320 4.76876 1.73857 4.28645 2.43746 3.78541 4.51985 4.77095 4.45488 4.36164 3.09772 3.48194 1.46581 5.32087 4.13894 20 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00637 5.45580 6.17814 0.61958 0.77255 0.48576 0.95510 21 5.22347 6.26960 6.44903 6.28595 0.27136 5.98896 5.03568 3.98689 6.08759 2.18908 4.48323 5.80306 6.18154 5.77074 5.89559 5.51180 5.44355 4.24223 5.07847 3.38560 21 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00637 5.45580 6.17814 0.61958 0.77255 0.48576 0.95510 22 4.61498 6.04422 5.96122 5.73825 4.47581 5.35093 6.27720 3.82806 5.56911 0.21728 4.32026 5.85560 2.59566 5.74388 5.59376 5.04609 4.97391 4.07107 6.53323 5.49489 22 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00637 5.45580 6.17814 0.61958 0.77255 0.48576 0.95510 23 4.38108 5.57759 6.43046 5.87924 2.55450 5.85628 6.25150 1.14851 5.76283 0.95055 3.83082 6.03483 5.92663 5.68318 5.72886 5.26013 4.60101 2.00680 6.28679 5.28328 23 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00637 5.45580 6.17814 0.61958 0.77255 0.48576 0.95510 24 3.60529 4.99227 5.54967 5.03912 4.33708 2.11202 5.48260 0.83033 4.90256 3.15444 4.23879 5.06709 5.24412 5.10164 5.00351 4.18687 2.41670 1.72685 6.02722 4.83225 24 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00637 5.45580 6.17814 0.61958 0.77255 0.48576 0.95510 25 4.45263 5.73008 6.25797 5.73765 3.96953 5.69949 6.11409 2.62802 5.54418 0.36596 3.73024 5.91005 2.35506 5.50912 5.52822 5.12084 4.68750 3.39774 6.17868 5.19332 25 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00637 5.45580 6.17814 0.61958 0.77255 0.48576 0.95510 26 5.72271 6.50133 6.36906 6.42426 1.64114 6.02521 4.54266 5.22797 6.18464 4.27254 5.71066 5.50540 6.26535 5.71552 5.89999 5.46308 5.90190 5.21140 4.60456 0.32027 26 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00637 5.45580 6.17814 0.61958 0.77255 0.48576 0.95510 27 3.02131 5.34575 6.35881 5.94407 4.91706 5.88990 6.89802 0.89344 5.94060 3.29446 4.59512 6.09918 6.10957 6.26195 6.15363 5.37044 4.44528 0.81296 7.16271 5.88701 27 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00637 5.45580 6.17814 0.61958 0.77255 0.48576 0.95510 28 3.45778 5.85619 3.60749 3.12378 5.30722 3.12757 4.30981 4.75009 1.35047 4.19817 4.97871 3.63601 4.55802 1.15687 3.22849 2.25797 3.68773 4.32787 6.28488 4.95314 28 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00637 5.45580 6.17814 0.61958 0.77255 0.48576 0.95510 29 3.31508 5.17777 4.67167 4.35139 4.74403 4.07321 5.19773 4.46632 4.32727 4.15599 5.03705 4.44594 4.79577 4.61497 4.58654 1.87729 0.54451 4.03579 6.22271 2.73635 29 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00637 5.45580 6.17814 0.61958 0.77255 0.48576 0.95510 30 1.84456 5.57261 3.35752 2.06542 4.91314 3.21658 4.07647 4.38893 2.81939 3.88261 4.62917 2.12219 4.27595 3.17876 2.88069 1.65229 3.33739 3.24618 6.02556 4.62401 30 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00637 5.45580 6.17814 0.61958 0.77255 0.48576 0.95510 31 2.82822 5.65358 2.34264 2.83059 5.00909 3.20239 4.11751 4.49222 1.96953 3.97092 4.71487 3.37827 4.31459 3.21934 2.83783 1.10295 3.39541 4.05489 6.10172 4.69305 31 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00429 5.45372 * 0.61958 0.77255 0.00000 * //