HMMER3/b [3.0 | March 2010] NAME PsbX ACC PF06596.6 DESC Photosystem II reaction centre X protein (PsbX) LENG 39 ALPH amino RF no CS yes MAP yes DATE Thu Oct 4 14:44:23 2012 NSEQ 22 EFFN 4.326416 CKSUM 1065880390 GA 25.00 25.00; TC 31.00 31.00; NC 20.30 19.70; BM hmmbuild HMM.ann SEED.ann SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq STATS LOCAL MSV -7.7102 0.71952 STATS LOCAL VITERBI -7.7527 0.71952 STATS LOCAL FORWARD -4.2791 0.71952 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 2.35270 5.02644 3.31154 3.93741 3.07140 2.96723 4.87441 2.28742 3.38323 2.06382 3.54329 3.49838 3.37326 3.61187 3.11580 2.20302 2.85639 2.10615 4.83825 4.41164 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00803 5.22397 5.94632 0.61958 0.77255 0.00000 * 1 4.06369 5.28090 6.09186 5.54947 3.98660 5.52900 5.97661 2.11205 5.43104 2.01488 0.82441 5.69259 5.66657 5.44620 5.44815 4.92290 4.29394 1.58721 6.12232 5.07656 1 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00803 5.22397 5.94632 0.61958 0.77255 0.48576 0.95510 2 2.06299 4.95080 5.06707 4.88247 5.57837 3.75824 5.65428 5.01794 4.85380 4.73293 5.50941 4.52706 4.60645 5.02800 4.98626 2.11424 0.47650 4.24249 6.93176 5.84605 2 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00803 5.22397 5.94632 0.61958 0.77255 0.48576 0.95510 3 2.50524 4.97585 4.82619 4.60385 5.60377 2.28866 5.52498 5.08745 4.65092 4.75294 5.51145 4.42673 0.57257 4.84377 4.86477 2.43663 2.82887 4.28223 6.92511 5.80933 3 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00803 5.22397 5.94632 0.61958 0.77255 0.48576 0.95510 4 3.10138 5.02589 4.89734 4.85248 5.73029 3.79579 5.73781 5.24048 4.93287 4.94783 5.72828 4.54914 4.65808 5.12060 5.04570 0.25049 2.90726 4.38575 7.06776 5.96616 4 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00803 5.22397 5.94632 0.61958 0.77255 0.48576 0.95510 5 3.75066 5.15146 5.42597 4.92745 2.81570 4.83512 5.11421 3.12171 4.76310 0.47871 3.68912 4.98693 5.18592 4.85233 4.81767 2.52874 4.01506 3.19644 5.42982 4.09610 5 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00803 5.22397 5.94632 0.61958 0.77255 0.48576 0.95510 6 1.53353 5.24901 3.64131 3.16413 5.03884 2.21837 4.38490 4.50139 1.76989 4.04824 4.81580 3.61046 4.35242 3.52252 3.59324 1.52486 3.40412 4.00078 6.21033 4.87579 6 - H 2.68622 4.42229 2.77524 2.73128 3.46214 2.40517 3.72499 3.29358 2.67745 2.69359 4.24694 2.90351 2.73744 3.18151 2.89805 2.37891 2.77524 2.98523 4.58481 3.61507 0.10060 2.37418 5.94632 0.19802 1.71676 0.48576 0.95510 7 1.64176 5.14076 3.99274 3.75876 5.48081 2.60972 5.01801 4.97073 3.98351 4.57175 5.33955 0.80099 4.53541 4.22794 4.37894 2.29930 3.59742 4.27716 6.73295 5.47559 8 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00803 5.22397 5.94632 0.61958 0.77255 0.48576 0.95510 8 3.71696 5.05465 5.36046 4.86025 0.61748 4.78339 4.54934 3.35346 4.66756 2.82580 2.48664 4.77098 5.11232 4.72695 4.68739 4.11421 3.01916 3.26796 4.79905 2.69187 9 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00803 5.22397 5.94632 0.61958 0.77255 0.48576 0.95510 9 4.48670 5.65112 6.46821 5.89822 2.27649 5.93276 6.13841 1.23110 5.77550 0.75388 3.51245 6.10249 5.86853 5.53384 5.66240 5.35286 4.68105 3.15813 6.01833 5.01911 10 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00803 5.22397 5.94632 0.61958 0.77255 0.48576 0.95510 10 1.98437 4.60256 4.14770 3.57378 3.72277 4.05015 4.33225 2.53735 3.49945 2.03839 3.71509 2.43976 4.42742 3.76908 3.78206 2.11886 2.81526 2.86606 2.41185 3.99294 11 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00803 5.22397 5.94632 0.61958 0.77255 0.48576 0.95510 11 3.17802 5.10429 4.78280 4.77494 5.85196 2.53770 5.77637 5.43282 5.02445 5.09315 5.85420 4.56641 4.71050 5.15610 5.15892 0.27147 3.76062 4.51564 7.13692 6.07024 12 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00803 5.22397 5.94632 0.61958 0.77255 0.48576 0.95510 12 4.32226 5.51901 6.32056 5.74214 2.40789 5.73948 6.03597 2.06597 5.60989 0.54948 3.52615 5.91657 5.75573 5.44452 5.52928 5.13702 4.52604 2.25070 6.00876 5.04379 13 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00803 5.22397 5.94632 0.61958 0.77255 0.48576 0.95510 13 2.68145 4.57482 5.19099 4.59189 2.26202 4.44276 4.80242 1.99913 4.39576 1.66731 3.66089 4.59990 4.78866 4.53417 4.41963 3.76357 2.60195 1.35039 5.28151 4.10658 14 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00803 5.22397 5.94632 0.61958 0.77255 0.48576 0.95510 14 1.42814 4.55074 4.46346 3.88511 3.57739 4.13731 4.41886 3.00916 3.76821 2.00022 3.67115 4.10315 4.51504 3.99740 3.96362 2.13597 3.29207 2.81291 2.37343 2.89759 15 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00803 5.22397 5.94632 0.61958 0.77255 0.48576 0.95510 15 1.46255 5.09215 5.01880 5.01622 5.87723 0.47035 5.88359 5.38620 5.18524 5.08576 5.85605 4.65919 4.72786 5.29575 5.25757 3.39207 3.76785 4.49295 7.15994 6.15287 16 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00803 5.22397 5.94632 0.61958 0.77255 0.48576 0.95510 16 0.94676 4.78262 4.54814 4.05920 4.31207 1.71863 4.82782 3.55381 3.98418 2.72626 4.28360 4.19495 4.53811 4.24002 4.23871 3.30441 2.95267 2.38767 5.78498 4.59117 17 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.42836 5.22397 1.06992 0.61958 0.77255 0.48576 0.95510 17 2.58609 4.48813 5.07561 4.48249 2.70998 4.38461 4.74190 2.18609 4.30275 1.54030 2.91925 4.52718 4.70206 4.42573 4.33676 3.70979 3.38169 1.24730 5.18626 4.03376 18 - . 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01221 4.80782 5.53016 0.61958 0.77255 0.19216 1.74396 18 3.98065 5.19203 6.06171 5.54011 3.04995 5.49126 6.00512 1.17164 5.43641 1.48310 3.88530 5.66061 5.66521 5.51581 5.48241 4.89117 4.22022 1.17620 6.20894 5.10363 19 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00803 5.22397 5.94632 0.61958 0.77255 0.48576 0.95510 19 4.04222 5.20496 6.21798 5.81089 4.70910 5.78554 6.79960 1.38302 5.80874 3.05417 4.38658 5.98613 5.97946 6.12517 6.02442 5.28032 4.31289 0.48927 7.00506 5.73682 20 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00803 5.22397 5.94632 0.61958 0.77255 0.48576 0.95510 20 2.96110 5.07551 5.93630 5.43461 4.33509 5.38145 5.98858 1.84313 5.34160 1.52530 4.11078 5.54610 5.62020 5.53341 5.44742 4.78239 4.10595 0.75617 6.32681 5.14449 21 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00803 5.22397 5.94632 0.61958 0.77255 0.48576 0.95510 21 3.10392 4.49881 4.92052 4.32546 3.62382 2.37231 4.62484 1.38669 4.15029 1.99110 3.62977 4.38774 4.63759 4.31706 4.22111 3.02747 2.80220 1.70642 5.16905 3.98724 22 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00803 5.22397 5.94632 0.61958 0.77255 0.48576 0.95510 22 1.57724 4.87647 4.51560 4.08586 4.56110 3.88121 4.93792 3.84305 4.01587 2.28829 4.51565 4.21060 0.93812 4.29986 4.28255 3.29497 2.86390 3.51133 6.01828 4.82511 23 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00803 5.22397 5.94632 0.61958 0.77255 0.48576 0.95510 23 1.65005 4.77365 5.23916 4.68360 3.96002 4.62198 5.10095 1.00051 4.53399 2.06906 3.87854 4.77176 4.99395 4.72444 4.63775 3.96603 2.71096 2.40644 5.63547 4.45396 24 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00803 5.22397 5.94632 0.61958 0.77255 0.48576 0.95510 24 1.83604 4.60509 4.20453 3.63414 2.56665 2.47289 4.37458 3.09910 3.55711 2.49156 3.74312 3.93899 4.44017 3.82126 3.83027 2.23173 1.90871 2.50434 5.23244 4.02462 25 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00803 5.22397 5.94632 0.61958 0.77255 0.48576 0.95510 25 1.63987 4.55364 4.75405 4.17379 3.70401 1.98850 4.62207 1.82145 4.03554 2.48903 3.70017 4.31305 4.62758 4.23638 4.17324 3.55047 2.80872 1.90848 5.24442 4.05641 26 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00803 5.22397 5.94632 0.61958 0.77255 0.48576 0.95510 26 0.83225 4.68946 4.73950 4.24551 2.54355 2.51163 4.81349 3.31900 4.13990 3.13614 4.06784 4.30260 4.57745 4.35130 4.31193 3.38034 3.41829 2.13137 5.56342 4.36455 27 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00803 5.22397 5.94632 0.61958 0.77255 0.48576 0.95510 27 4.32079 5.48835 6.37406 5.84605 3.96562 5.87583 6.32914 2.05496 5.75433 0.51839 3.68428 6.05759 5.88651 5.65409 5.73052 5.31364 4.54297 1.78243 6.26226 5.29741 28 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00803 5.22397 5.94632 0.61958 0.77255 0.48576 0.95510 28 3.98382 5.18444 6.08341 5.57990 3.13359 5.54147 6.11291 0.82613 5.49361 1.89278 3.97957 5.70925 5.71813 5.61060 5.56646 4.95343 4.22858 1.32511 6.32530 5.19343 29 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00803 5.22397 5.94632 0.61958 0.77255 0.48576 0.95510 29 2.21983 4.41654 4.95103 4.33954 1.47582 2.78687 4.53042 2.27809 4.13527 2.00456 3.52925 4.34669 4.56346 4.27482 4.16031 3.50973 3.26741 2.25455 3.54991 3.85750 30 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00803 5.22397 5.94632 0.61958 0.77255 0.48576 0.95510 30 4.04885 5.20465 6.22642 5.79922 4.63939 5.81166 6.73107 0.95841 5.79437 2.52541 4.32117 5.98320 5.97193 6.07427 5.99143 5.29198 4.31109 0.80825 6.91677 5.68267 31 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00803 5.22397 5.94632 0.61958 0.77255 0.48576 0.95510 31 3.56469 5.43178 5.03645 5.05082 5.84510 4.16406 5.97473 5.64219 5.23071 5.26947 6.14030 4.89439 5.00243 5.44128 5.32597 0.14318 4.14204 4.82812 7.05998 5.99728 32 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00803 5.22397 5.94632 0.61958 0.77255 0.48576 0.95510 32 3.14952 5.59233 3.36895 2.83084 4.95868 3.88407 4.04057 4.41461 2.42648 3.88459 4.64816 2.47326 4.28199 0.99160 2.73497 2.71452 2.92819 3.99899 5.99850 4.63544 33 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00803 5.22397 5.94632 0.61958 0.77255 0.48576 0.95510 33 2.98309 5.30426 3.31617 2.75886 2.61508 3.78888 3.98413 3.04599 1.91903 3.57883 4.36436 2.47143 4.18017 2.75228 2.87193 2.25525 2.04425 3.65693 5.78076 4.41768 34 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00803 5.22397 5.94632 0.61958 0.77255 0.48576 0.95510 34 5.02516 6.82892 0.09027 4.09422 6.53019 4.81758 5.80801 6.54100 5.17722 5.89204 7.02490 4.66961 5.52607 5.14404 5.71025 4.94592 5.41274 6.07934 7.30999 6.39160 35 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00803 5.22397 5.94632 0.61958 0.77255 0.48576 0.95510 35 3.29240 5.70023 3.59882 2.98685 5.11296 4.01586 4.08460 4.54016 1.40425 3.97289 4.75042 3.48901 2.72012 2.17849 1.60993 2.40667 3.49641 4.13283 6.04438 4.73519 36 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00803 5.22397 5.94632 0.61958 0.77255 0.48576 0.95510 36 3.74204 4.99623 5.78931 5.24937 4.12218 5.16634 5.65362 1.76611 5.11757 1.57922 3.07803 5.32720 5.42489 5.26309 5.17880 4.53627 3.18859 0.85710 6.01513 4.85733 37 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00803 5.22397 5.94632 0.61958 0.77255 0.48576 0.95510 37 2.97487 5.47813 2.39679 2.20320 4.82015 3.74971 3.93703 3.55394 2.08131 3.78207 4.51961 3.21836 4.14312 2.13141 2.37938 2.63397 2.33130 3.28413 5.91260 3.54545 38 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00803 5.22397 5.94632 0.61958 0.77255 0.48576 0.95510 38 5.17905 6.58706 5.77723 5.22454 6.33654 5.17231 5.67682 6.16662 3.93919 5.43148 6.50349 5.45201 5.71407 4.95089 0.08757 5.28923 5.42839 5.84302 6.94554 6.17008 39 - X 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00803 5.22397 5.94632 0.61958 0.77255 0.48576 0.95510 39 2.97761 5.46868 2.84050 2.67695 3.70568 3.12174 3.94193 4.28639 1.85226 3.77088 4.51209 2.43818 4.14706 3.04107 2.83756 1.73508 2.26220 3.85537 5.90654 4.50055 40 - X 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00541 5.22135 * 0.61958 0.77255 0.00000 * //