HMMER3/b [3.0 | March 2010] NAME MHC_I_C ACC PF06623.6 DESC MHC_I C-terminus LENG 29 ALPH amino RF no CS no MAP yes DATE Sat Oct 6 03:47:20 2012 NSEQ 14 EFFN 5.943848 CKSUM 3427009711 GA 20.40 20.40; TC 20.40 20.40; NC 20.30 20.20; BM hmmbuild HMM.ann SEED.ann SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq STATS LOCAL MSV -6.7243 0.71993 STATS LOCAL VITERBI -6.8631 0.71993 STATS LOCAL FORWARD -4.4698 0.71993 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 2.37730 3.76079 2.29701 3.31504 5.03808 2.17613 4.74232 4.02477 2.63620 2.87914 4.90302 3.07385 3.19449 2.91170 3.29859 1.79367 3.01985 3.19293 6.38775 3.54700 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00611 5.49656 6.21890 0.61958 0.77255 0.00000 * 1 3.68205 6.00780 3.63045 3.28545 5.42795 4.25515 2.90914 4.93150 3.07180 4.38961 5.20679 0.60216 4.73878 3.64576 2.52360 2.76261 3.92856 4.52321 6.44819 5.11406 1 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00611 5.49656 6.21890 0.61958 0.77255 0.48576 0.95510 2 3.38665 5.42251 4.25287 3.88271 5.50853 4.08379 5.00089 4.94734 2.41025 4.53741 5.33869 4.18823 4.75980 4.18811 4.03064 1.21666 0.87683 4.38893 6.69711 5.45501 2 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00611 5.49656 6.21890 0.61958 0.77255 0.48576 0.95510 3 4.60413 6.58678 2.48342 4.15619 6.70016 0.18398 5.87902 6.51756 5.21690 5.95599 6.93916 4.67211 5.51281 5.17641 5.76166 4.62285 5.07614 5.84852 7.60614 6.55977 3 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00611 5.49656 6.21890 0.61958 0.77255 0.48576 0.95510 4 3.48892 5.71651 3.59152 2.06923 5.16770 0.76521 4.50035 4.58144 3.20189 4.14673 4.96789 3.74191 4.64015 3.65036 2.59644 3.50299 3.76332 2.79879 6.32908 5.00104 4 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00611 5.49656 6.21890 0.61958 0.77255 0.48576 0.95510 5 4.55019 6.53002 4.85883 4.14682 6.22297 4.92619 4.71677 5.48509 0.29939 4.75089 5.67843 4.45463 5.28330 2.42195 2.95848 4.50110 4.63522 5.18502 6.63289 5.60620 5 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00611 5.49656 6.21890 0.61958 0.77255 0.48576 0.95510 6 3.65556 5.64939 4.27828 3.69380 5.13889 0.71695 4.58615 4.47614 2.32794 4.06448 4.93090 4.07954 4.82618 3.75716 2.52558 3.73686 3.91079 2.17367 6.23939 5.04087 6 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.04766 5.49656 3.15959 0.61958 0.77255 0.48576 0.95510 7 3.46426 5.64886 3.62330 2.33016 5.10266 0.73803 4.48947 4.50505 3.17532 4.08406 4.91347 3.75040 4.62751 3.64595 2.50462 3.49144 3.74090 2.73835 6.27594 4.96394 7 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00637 5.45526 6.17761 0.61958 0.77255 0.39163 1.12688 8 3.15782 5.64725 1.75131 2.83710 4.99035 3.91113 4.12097 4.47169 2.86847 3.95685 4.70140 1.75212 3.01033 3.22292 2.49498 1.95445 3.39254 2.98439 6.09358 4.68501 8 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00611 5.49656 6.21890 0.61958 0.77255 0.48576 0.95510 9 4.25170 2.60194 5.42543 5.21883 3.36399 4.95116 4.79991 4.69625 5.06615 4.15541 5.29649 2.65566 5.52629 5.21091 5.14333 4.41650 4.63838 4.46475 5.02026 0.37049 9 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00611 5.49656 6.21890 0.61958 0.77255 0.48576 0.95510 10 1.08912 4.76779 4.66327 4.10467 3.97866 4.22236 4.71926 2.13201 4.00226 3.06097 3.97883 4.29972 2.87178 4.23591 4.21293 2.62475 2.39804 2.26720 5.47921 4.28537 10 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00611 5.49656 6.21890 0.61958 0.77255 0.48576 0.95510 11 3.74350 5.63837 4.17421 3.79490 4.69113 4.45624 4.82575 4.14106 3.50167 1.66838 4.64514 4.21209 1.36684 1.19475 3.77742 3.86822 4.02565 4.00073 6.17632 4.91088 11 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00611 5.49656 6.21890 0.61958 0.77255 0.48576 0.95510 12 0.49030 5.78071 2.47143 3.43422 5.56955 4.15179 4.84108 5.03803 3.67400 4.59370 5.41337 3.91622 4.78334 4.01252 2.45637 3.63194 3.96408 4.54588 6.74537 5.39894 12 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00611 5.49656 6.21890 0.61958 0.77255 0.48576 0.95510 13 1.08236 5.21738 5.34676 5.24658 6.01479 4.00403 6.02556 5.51783 5.28024 5.20121 5.94365 4.81642 0.90409 5.40899 5.37504 1.89614 3.87573 4.61315 7.34580 6.29308 13 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00611 5.49656 6.21890 0.61958 0.77255 0.48576 0.95510 14 3.35693 2.28019 1.64932 3.91879 5.67623 1.30289 5.21449 5.16254 4.19917 4.76711 5.54360 4.21638 4.76667 4.42475 4.61300 1.36715 3.83853 4.49713 6.93743 5.66702 14 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.13678 5.49656 2.08962 0.61958 0.77255 0.48576 0.95510 15 3.56570 5.90517 3.85796 3.25198 5.37337 4.23872 4.27280 4.76903 2.00761 4.18114 4.98423 2.08753 4.61808 3.38428 1.08719 1.82304 3.75979 4.37697 6.22541 4.96714 15 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00696 5.36674 6.08909 0.61958 0.77255 0.93304 0.49982 16 5.27486 7.00428 0.07014 4.34734 6.74635 5.02704 6.04572 6.80015 5.43491 6.12155 7.27194 4.92126 5.73328 5.39877 5.94453 5.20276 5.66426 6.33548 7.47730 6.62480 16 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00696 5.36674 6.08909 0.61958 0.77255 0.93304 0.49982 17 3.74797 5.60606 5.27120 5.30164 6.05477 4.33965 6.19255 5.87716 5.48643 5.49189 6.35959 5.10548 5.18046 5.67989 5.55528 0.11536 4.32961 5.03466 7.24088 6.21661 17 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00696 5.36674 6.08909 0.61958 0.77255 0.28238 1.40237 18 0.73010 5.36155 2.73905 3.86486 5.56326 4.00729 5.10977 5.03331 4.04433 4.63827 5.41342 4.17103 4.72260 4.30624 4.45860 1.52772 2.55110 4.40644 6.81768 5.54354 18 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00611 5.49656 6.21890 0.61958 0.77255 0.48576 0.95510 19 4.42697 6.80617 3.49775 2.48502 6.22485 4.52888 5.07080 5.85041 3.81839 5.22952 6.18442 4.05623 5.17919 0.28355 4.17296 4.29722 4.72099 5.42692 7.18315 5.83600 19 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00611 5.49656 6.21890 0.61958 0.77255 0.48576 0.95510 20 3.29778 5.22659 5.31140 5.25005 6.07859 0.96829 6.05858 5.59698 5.33519 5.27453 6.00598 4.82026 4.87587 5.44419 5.42057 0.84683 2.50226 4.65044 7.40197 6.35961 20 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00611 5.49656 6.21890 0.61958 0.77255 0.48576 0.95510 21 3.91963 5.76900 5.48482 5.52693 6.24452 4.50358 6.38756 6.08701 5.71366 5.69020 6.55613 5.29852 5.34528 5.89296 5.75975 0.09491 4.50417 5.22302 7.40271 6.41482 21 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00611 5.49656 6.21890 0.61958 0.77255 0.48576 0.95510 22 4.35545 7.27240 0.36908 2.36200 6.47879 4.28021 5.01191 6.13467 4.32042 5.52988 6.51221 2.31489 5.01647 4.21277 5.15356 4.12731 4.69796 5.61537 7.67810 5.95645 22 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00611 5.49656 6.21890 0.61958 0.77255 0.48576 0.95510 23 3.73058 5.02101 5.75231 5.19258 4.22342 5.07665 5.52168 1.70151 5.03476 2.31382 2.85707 5.23661 5.38443 5.19744 5.08860 2.96230 3.97328 0.71853 5.96116 4.77854 23 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00611 5.49656 6.21890 0.61958 0.77255 0.48576 0.95510 24 3.47071 5.39003 5.12225 5.12560 6.12337 4.13816 6.08458 5.73681 5.33044 5.38975 6.16028 4.87947 2.66174 5.48095 5.44060 0.21873 4.05602 4.81338 7.40063 6.34170 24 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00611 5.49656 6.21890 0.61958 0.77255 0.48576 0.95510 25 5.42582 6.51994 6.66114 6.46261 4.59429 5.97669 6.80788 3.96340 6.35793 0.08892 4.41577 6.70742 6.30794 6.30211 6.22706 6.12831 5.69031 4.33269 6.73561 5.78666 25 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.06241 5.49656 2.87531 0.61958 0.77255 0.48576 0.95510 26 3.14723 5.11938 3.77160 3.23586 4.39584 4.00594 4.33606 3.78283 3.20706 2.05377 4.29979 3.69580 2.52832 2.73634 3.62057 2.13549 1.27035 3.49604 5.75181 4.47244 26 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00646 5.44061 6.16296 0.61958 0.77255 0.71056 0.67603 27 1.34162 5.59029 0.77511 3.53681 5.45640 4.09454 5.01971 4.58165 4.06494 4.46567 5.36061 3.98712 4.79002 4.23428 4.55191 3.61448 3.94443 2.65389 6.80128 5.45754 27 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00646 5.44061 6.16296 0.61958 0.77255 0.71056 0.67603 28 3.22261 0.89684 4.18382 2.58141 4.98681 2.62042 4.89227 4.39538 3.83120 4.05967 4.89250 4.09278 2.20715 4.13067 4.21005 3.37757 2.33495 3.96531 6.33167 5.08435 28 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00646 5.44061 6.16296 0.61958 0.77255 0.36717 1.17990 29 2.44062 6.16142 3.63309 2.05778 5.64474 4.31556 4.52829 5.06001 0.58526 4.48755 5.30985 3.81586 4.79273 3.65649 3.34394 3.73752 4.02012 4.65308 6.54762 5.24674 29 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00412 5.49456 * 0.61958 0.77255 0.00000 * //