HMMER3/b [3.0 | March 2010] NAME VLPT ACC PF07122.6 DESC Variable length PCR target protein (VLPT) LENG 30 ALPH amino RF no CS no MAP yes DATE Thu Oct 4 21:55:45 2012 NSEQ 4 EFFN 2.457031 CKSUM 2062407497 GA 20.20 20.20; TC 23.80 24.30; NC 19.90 20.00; BM hmmbuild HMM.ann SEED.ann SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq STATS LOCAL MSV -7.0316 0.71988 STATS LOCAL VITERBI -7.1106 0.71988 STATS LOCAL FORWARD -4.2766 0.71988 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 3.35932 5.29244 2.39139 2.15600 3.08518 3.29377 3.19954 3.51847 3.36533 2.15445 4.52824 3.41118 3.06195 2.38351 4.09742 1.85182 3.81484 2.88535 5.81119 4.43283 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.25757 4.77428 1.52039 0.61958 0.77255 0.00000 * 1 3.86444 5.94365 0.30720 3.00200 5.44883 3.86652 4.71304 5.22427 3.94571 4.71925 5.75689 3.57641 4.56331 3.98307 4.51626 3.78191 4.22959 4.80419 6.46018 5.27158 1 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01610 4.53282 5.25516 0.61958 0.77255 0.30044 1.34896 2 4.34571 5.58363 5.63584 5.35225 3.75896 5.12717 5.76448 3.06063 5.14219 0.24912 3.62475 5.56822 5.45926 5.26628 5.14115 4.94676 4.61967 3.31240 5.86479 4.77527 2 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01262 4.77428 5.49663 0.61958 0.77255 0.48576 0.95510 3 4.07005 5.86806 3.96904 3.82695 5.18965 4.30191 4.95291 5.08631 3.60631 4.47076 5.55942 4.26218 4.91663 0.25240 3.83189 4.12291 4.40892 4.77225 6.29139 5.12821 3 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01262 4.77428 5.49663 0.61958 0.77255 0.48576 0.95510 4 4.07005 5.86806 3.96904 3.82695 5.18965 4.30191 4.95291 5.08631 3.60631 4.47076 5.55942 4.26218 4.91663 0.25240 3.83189 4.12291 4.40892 4.77225 6.29139 5.12821 4 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01262 4.77428 5.49663 0.61958 0.77255 0.48576 0.95510 5 3.03377 4.92648 4.31374 4.25685 5.18546 3.65416 5.27500 4.88491 4.40487 4.54841 5.43358 4.24571 4.47262 4.67260 4.58672 0.28619 3.58823 4.18699 6.47487 5.30612 5 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01262 4.77428 5.49663 0.61958 0.77255 0.48576 0.95510 6 3.03377 4.92648 4.31374 4.25685 5.18546 3.65416 5.27500 4.88491 4.40487 4.54841 5.43358 4.24571 4.47262 4.67260 4.58672 0.28619 3.58823 4.18699 6.47487 5.30612 6 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01262 4.77428 5.49663 0.61958 0.77255 0.48576 0.95510 7 3.58272 6.23340 1.01957 2.56632 5.55295 3.69044 4.36315 5.18749 3.52467 4.63960 5.54377 1.14594 4.38187 3.55210 4.21096 3.42672 3.91165 4.69993 6.74021 5.15508 7 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01262 4.77428 5.49663 0.61958 0.77255 0.48576 0.95510 8 3.03377 4.92648 4.31374 4.25685 5.18546 3.65416 5.27500 4.88491 4.40487 4.54841 5.43358 4.24571 4.47262 4.67260 4.58672 0.28619 3.58823 4.18699 6.47487 5.30612 8 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01262 4.77428 5.49663 0.61958 0.77255 0.48576 0.95510 9 4.25540 6.25795 0.20063 3.35179 5.82848 4.17990 5.07869 5.68779 4.36636 5.13461 6.20637 3.92815 4.88570 4.36904 4.93770 4.16813 4.63085 5.24935 6.76329 5.65556 9 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01262 4.77428 5.49663 0.61958 0.77255 0.48576 0.95510 10 3.05041 4.73354 4.32375 3.95571 3.83345 3.90172 4.69877 3.16261 3.82519 0.83675 3.86349 4.12492 4.49283 4.14683 4.03505 1.70157 3.42403 3.03622 5.50212 4.24369 10 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01262 4.77428 5.49663 0.61958 0.77255 0.48576 0.95510 11 4.49408 5.97908 4.52063 4.43449 4.39504 4.56423 0.17808 5.37646 4.29136 4.70031 5.87631 4.77740 5.18698 4.83742 4.45803 4.58761 4.86016 5.08731 5.79959 4.33819 11 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01262 4.77428 5.49663 0.61958 0.77255 0.48576 0.95510 12 3.47905 5.80158 2.84870 0.98261 5.40642 1.20560 4.45588 4.95971 3.46651 4.46396 5.33635 3.37668 4.42780 3.64527 3.99900 3.42118 3.82398 4.48279 6.52254 5.13764 12 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01262 4.77428 5.49663 0.61958 0.77255 0.48576 0.95510 13 2.79768 4.75105 3.99196 3.82556 5.11517 3.47364 4.94723 4.64131 3.96751 4.29171 5.10103 3.92382 1.11506 4.23587 4.24783 1.02450 3.32560 3.94745 6.41715 5.22186 13 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01262 4.77428 5.49663 0.61958 0.77255 0.48576 0.95510 14 3.13973 4.85174 4.40435 4.09114 1.19986 3.91459 4.41065 3.70305 4.06566 3.28127 4.34860 4.14643 4.54870 4.27384 4.26888 1.09719 3.54891 3.44824 4.88197 3.26930 14 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01262 4.77428 5.49663 0.61958 0.77255 0.48576 0.95510 15 3.14006 4.91765 3.83005 3.36604 1.88696 3.97557 1.93014 3.55921 3.33044 3.15755 4.11872 3.71879 4.41733 3.63404 3.67313 1.40678 3.40867 3.31947 4.73194 3.13331 15 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01262 4.77428 5.49663 0.61958 0.77255 0.48576 0.95510 16 3.66783 4.92060 5.59376 5.11345 3.86398 5.08429 5.68074 2.17833 4.97799 1.40901 3.65071 5.26346 5.33320 5.15051 5.08327 4.51001 3.92892 0.74890 5.95529 4.80017 16 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01262 4.77428 5.49663 0.61958 0.77255 0.48576 0.95510 17 4.13897 6.15709 3.32812 0.23333 5.68941 4.17187 4.95458 5.38530 3.99932 4.86514 5.89806 3.90747 4.83977 4.21300 4.44310 4.07322 4.47929 4.99996 6.64370 5.52209 17 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01262 4.77428 5.49663 0.61958 0.77255 0.48576 0.95510 18 4.34571 5.58363 5.63584 5.35225 3.75896 5.12717 5.76448 3.06063 5.14219 0.24912 3.62475 5.56822 5.45926 5.26628 5.14115 4.94676 4.61967 3.31240 5.86479 4.77527 18 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01262 4.77428 5.49663 0.61958 0.77255 0.48576 0.95510 19 3.59259 5.17366 4.66549 4.40262 1.07948 4.28015 4.58032 3.79398 4.37092 3.22662 4.43625 4.47869 1.04236 4.57329 4.52781 3.82012 3.96446 3.65392 4.94622 3.33519 19 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01262 4.77428 5.49663 0.61958 0.77255 0.48576 0.95510 20 3.16744 5.52349 1.20900 2.67203 5.21185 1.89368 4.27261 4.73455 3.27306 4.24496 5.06025 3.21748 4.24124 3.43876 3.83975 1.67215 3.52163 4.21629 6.39739 4.93975 20 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01262 4.77428 5.49663 0.61958 0.77255 0.48576 0.95510 21 3.41222 5.07771 4.43614 4.12290 4.06212 4.14949 4.93758 3.39781 3.97022 1.43738 4.09552 4.36012 0.80446 4.35439 4.18135 3.67870 3.78313 3.33137 5.74959 4.51697 21 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01262 4.77428 5.49663 0.61958 0.77255 0.48576 0.95510 22 3.05717 4.81949 4.30075 3.98041 1.75746 3.82297 4.46701 3.74384 3.96713 3.34158 4.38446 4.07452 4.47805 4.20167 4.20069 0.78099 3.47962 3.46011 5.04323 3.45968 22 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01262 4.77428 5.49663 0.61958 0.77255 0.48576 0.95510 23 3.40259 5.76162 3.15821 1.63975 5.19716 3.88052 4.07166 4.61488 0.87835 4.03651 4.87658 3.36541 4.35609 3.20476 2.85339 3.33647 3.61636 4.22865 6.07966 4.79545 23 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01262 4.77428 5.49663 0.61958 0.77255 0.48576 0.95510 24 4.13897 6.15709 3.32812 0.23333 5.68941 4.17187 4.95458 5.38530 3.99932 4.86514 5.89806 3.90747 4.83977 4.21300 4.44310 4.07322 4.47929 4.99996 6.64370 5.52209 24 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01262 4.77428 5.49663 0.61958 0.77255 0.48576 0.95510 25 1.90174 4.91456 3.31402 1.47042 4.26490 3.69891 4.10525 3.35743 2.97280 3.24339 4.13952 3.37960 4.17785 3.30210 3.40490 3.01269 3.18751 1.86876 5.63156 4.32927 25 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01262 4.77428 5.49663 0.61958 0.77255 0.48576 0.95510 26 3.66966 4.86212 5.76599 5.32806 4.27108 5.30667 6.15085 1.26601 5.28130 2.66923 3.98885 5.49002 5.53429 5.55968 5.46422 4.76556 3.93781 0.67016 6.44396 5.20611 26 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01262 4.77428 5.49663 0.61958 0.77255 0.48576 0.95510 27 4.07005 5.86806 3.96904 3.82695 5.18965 4.30191 4.95291 5.08631 3.60631 4.47076 5.55942 4.26218 4.91663 0.25240 3.83189 4.12291 4.40892 4.77225 6.29139 5.12821 27 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01262 4.77428 5.49663 0.61958 0.77255 0.48576 0.95510 28 4.19761 5.38601 5.89839 5.41445 1.75843 5.43311 5.24438 2.79637 5.25847 0.55231 3.27438 5.48374 5.47362 5.07944 5.17986 4.86170 4.39846 3.09832 5.24766 3.86717 28 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01262 4.77428 5.49663 0.61958 0.77255 0.48576 0.95510 29 3.49078 5.84102 2.82585 0.69072 5.41361 1.77156 4.43910 4.96937 3.44933 4.46718 5.33908 3.35853 4.42434 3.62579 3.98813 3.42297 3.82853 4.49617 6.52575 5.13051 29 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01262 4.77428 5.49663 0.61958 0.77255 0.48576 0.95510 30 3.21988 5.71965 1.69292 2.56078 5.15789 3.62214 4.15432 4.68472 3.11504 4.17084 4.98139 1.82613 4.22111 3.30596 3.68675 1.27335 3.52004 4.21659 6.31676 4.83321 30 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00852 4.77018 * 0.61958 0.77255 0.00000 * //