# STOCKHOLM 1.0
#=GF ID   Rho_RNA_bind
#=GF AC   PF07497.7
#=GF DE   Rho termination factor, RNA-binding domain
#=GF AU   Finn, RD
#=GF SE   Pfam-B_1610 (release 11.0)
#=GF GA   21.00 21.00;
#=GF TC   21.10 21.40;
#=GF NC   20.50 20.60;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF RN   [1]
#=GF RM   10230401
#=GF RT   The structural basis for terminator recognition by the Rho
#=GF RT   transcription termination factor. 
#=GF RA   Bogden CE, Fass D, Bergman N, Nichols MD, Berger JM; 
#=GF RL   Mol Cell 1999;3:487-493.
#=GF DR   INTERPRO; IPR011113;
#=GF DR   SCOP; 1pv4; fa;
#=GF CC   The Rho termination factor disengages newly transcribed RNA from
#=GF CC   its DNA template at certain, specific transcripts.  It it
#=GF CC   thought that two copies of Rho bind to RNA and that Rho
#=GF CC   functions as a hexamer of protomers [1].
#=GF SQ   16
#=GS Q89WP3_BRAJA/52-129   AC Q89WP3.1
#=GS RHO_RHOS4/53-130      AC P52156.1
#=GS Q9A211_CAUCR/112-189  AC Q9A211.1
#=GS RHO_TREPA/148-225     AC O83281.1
#=GS Q8F7C5_LEPIN/115-192  AC Q8F7C5.1
#=GS RHO_BUCAP/49-126      AC O51891.2
#=GS Q820N0_NITEU/49-126   AC Q820N0.1
#=GS Q8Y057_RALSO/49-126   AC Q8Y057.1
#=GS RHO_NEIGO/49-126      AC Q06447.1
#=GS Q879Y4_XYLFT/57-134   AC Q879Y4.1
#=GS Q9F7M3_PRB01/49-126   AC Q9F7M3.1
#=GS O84498_CHLTR/98-175   AC O84498.1
#=GS RHO_BACSU/52-128      AC Q03222.3
#=GS Q836E4_ENTFA/53-129   AC Q836E4.1
#=GS RHO_HELPY/71-148      AC P56466.1
#=GS RHO_THEMA/56-133      AC P38527.2
#=GS RHO_THEMA/56-133      DR PDB; 3L0O A; 56-131;
#=GS RHO_THEMA/56-133      DR PDB; 3L0O B; 58-130;
Q89WP3_BRAJA/52-129              IVGEGVVE.VLSDGFGFLRSPDANYLPGPDDIYVSPSQIRRFGLRTGDTIEGHIRSPKEGERYFALLKVNTLNFEDPEK
RHO_RHOS4/53-130                 VGGDGVLE.VLQDGFGFLRSPEANYLPGPDDIYVSPEILRQFSLRTGDTIEGVIVAPRENERYFSLTRVTKINFDDPER
Q9A211_CAUCR/112-189             ISGSGTME.VLQDGFGFLRSPEANYLPGPDDIYVSPSQIRKYGLRTGDSVEGAIRSPREGERYFALTSVTKINFESPDN
RHO_TREPA/148-225                IFASGSLE.ILPDGYGFLRSPQNSYLPGSDDIYVSPSQIRLFNLKTGDTIYGQIRSPKEGERFFAMLRVETVNFEEVAK
Q8F7C5_LEPIN/115-192             VHAAGVME.KLPDGYGFLRSPDYNYVPGPDDIYVSPSQIKLFGLRTGDTVEGQIRPPKESERFFAMLRVETVNGYTPDV
RHO_BUCAP/49-126                 IFGDGVLE.ILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNAVNYDKPEN
Q820N0_NITEU/49-126              IFGEGTLE.ILQDGFGFLRSPDTSYLAGPDDIYISPSQIRRFNLHTGDSVDGEIRPPKEGERYFALVKIDKVNNEPPEN
Q8Y057_RALSO/49-126              IFGDGTLE.VLPDGFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVNAQPPEA
RHO_NEIGO/49-126                 FTCSGTLE.ILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRVPKDNERYFALVRLDSINGDHPEV
Q879Y4_XYLFT/57-134              VFADGVLE.ILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIRFPKDGERYFALSIVDTINGEPLEA
Q9F7M3_PRB01/49-126              IYGGGVLE.ILNDGFGFLRSPEGSYCAGEDDIYVSPSQIRKFSLRKGDSVAGKIRTPKDKERYFALIQVDTINGEEPRK
O84498_CHLTR/98-175              LIGEGVLE.VLPDGFGFLRSPTYNYLPSAEDIYVSPAQIRRFDLKKGDTIVGTIRSPKEKEKYFALLKVDKINGSTPDK
RHO_BACSU/52-128                 LFMEGVLEIIQSEGFGFLRPI..NYSPSSEDIYISASQIRRFDLRNGDKVSGKVRPPKENERYYGLLHVEAVNGDDPES
Q836E4_ENTFA/53-129              FFMEGILDIVSQDGYGFLRPI..NYGPSAEDIYISSSQIRRFGLRNGDKVAGKARPPKESERYYGLMHVESVNGKDPEE
RHO_HELPY/71-148                 ILFTGILE.IMPDGYGFLRGFDGSFSDGHNDTYVSPSQIRRFALRNGDIVTGQVRSPKDQEKYYALLKIEAINYSPSDE
RHO_THEMA/56-133                 FFGEGVLE.IHPEGFGFLRRIEDNLLPSNDDIYISPSQIRKFNLNTGDIISGVIRKPKEGEKYFAMIKIEAINYRPVEA
#=GR RHO_THEMA/56-133      SS    EEEEEEEE.E-TTS-EEEE-GGGTT---TT-EEE-CCCCCCTT--TT-EEEEEEEXXXSSSXSEEECEECEETTEEXXX
#=GC SS_cons                     EEEEEEEE.E-TTS-EEEE-GGGTT---TT-EEE-CCCCCCTT--TT-EEEEEEEXXXSSSXSEEECEECEETTEEXXX
#=GC seq_cons                    lau-GlLE.lLsDGFGFLRSs-ssYLsGsDDIYVSPSQIRRFsLRTGDolpGpIRsPKEuERYFALl+V-slNh-sPEp
//