HMMER3/b [3.0 | March 2010] NAME Hep_core_N ACC PF08290.6 DESC Hepatitis core protein, putative zinc finger LENG 27 ALPH amino RF no CS no MAP yes DATE Fri Oct 5 17:58:49 2012 NSEQ 2 EFFN 1.511719 CKSUM 1148323260 GA 25.00 25.00; TC 26.10 27.40; NC 24.70 24.90; BM hmmbuild HMM.ann SEED.ann SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq STATS LOCAL MSV -7.3352 0.72003 STATS LOCAL VITERBI -7.2917 0.72003 STATS LOCAL FORWARD -4.5088 0.72003 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 2.82061 2.09271 4.24161 3.99877 3.02199 3.01059 4.20462 2.51656 3.18454 1.80423 3.74485 4.19492 3.21869 3.15249 4.03441 2.45714 2.78804 2.94620 3.44641 4.27247 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.00000 * 1 3.44042 4.73727 5.18982 4.65157 3.41949 4.75050 5.15749 1.22320 4.48508 1.81612 1.50971 4.84471 4.97286 4.62443 4.58312 4.12594 3.67891 2.16608 5.46839 4.36837 1 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 2 2.82524 1.54976 3.68789 3.24850 4.09815 3.57257 4.20471 3.50446 2.98510 3.18554 4.13460 3.57595 4.14621 1.45301 3.26526 2.99207 3.17702 3.21204 5.47725 4.21565 2 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 3 2.94841 4.55531 4.20672 3.74207 3.57880 3.89639 4.50519 2.63102 3.57564 1.26722 3.49751 3.98514 4.38811 3.90731 3.80631 3.28153 1.53383 2.53560 5.30550 4.10401 3 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 4 4.07634 5.31820 5.02870 4.87868 0.40690 4.56407 4.26418 3.57458 4.78368 2.82445 4.23451 4.70997 5.03157 4.80146 4.76196 4.29280 4.38849 3.60132 4.40321 2.72345 4 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 5 2.82108 4.88508 3.14924 2.84367 4.09604 3.47947 1.60687 3.93275 2.85238 3.51286 4.37753 3.27989 4.05847 3.26369 3.21890 1.43625 3.16448 3.54069 5.46960 4.03152 5 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 6 3.85937 5.17391 5.09702 4.77316 3.45957 4.69560 5.26166 2.72120 4.54214 0.40074 3.36406 5.00014 5.05544 4.76592 4.61175 4.39116 4.13845 2.89794 5.50348 4.34640 6 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 7 3.40404 0.27875 4.98272 4.87242 4.79423 3.87459 5.40457 4.08360 4.72611 3.94667 5.09635 4.72715 4.61635 5.04767 4.73668 3.67207 3.91790 3.77625 6.03607 5.06658 7 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 8 3.85937 5.17391 5.09702 4.77316 3.45957 4.69560 5.26166 2.72120 4.54214 0.40074 3.36406 5.00014 5.05544 4.76592 4.61175 4.39116 4.13845 2.89794 5.50348 4.34640 8 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 9 3.50968 4.81716 5.07864 4.74392 3.82749 4.63820 5.40532 0.56681 4.58842 2.33129 3.70935 4.91972 5.04714 4.89931 4.72737 4.22186 3.81064 2.02594 5.80979 4.57835 9 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 10 3.50968 4.81716 5.07864 4.74392 3.82749 4.63820 5.40532 0.56681 4.58842 2.33129 3.70935 4.91972 5.04714 4.89931 4.72737 4.22186 3.81064 2.02594 5.80979 4.57835 10 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 11 2.69893 4.60828 3.82217 3.70350 4.71674 3.33371 4.77321 4.33857 3.82041 4.02393 4.92087 3.80101 4.12481 4.12487 4.05817 0.48273 3.22682 3.73715 6.04462 4.81649 11 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 12 3.40404 0.27875 4.98272 4.87242 4.79423 3.87459 5.40457 4.08360 4.72611 3.94667 5.09635 4.72715 4.61635 5.04767 4.73668 3.67207 3.91790 3.77625 6.03607 5.06658 12 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 13 2.48239 4.42379 3.78431 3.48122 4.58391 3.20850 4.52106 3.97371 3.49516 3.68900 4.52218 3.60300 3.96414 3.79648 3.79427 1.22443 1.29001 3.42577 5.93175 4.72063 13 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 14 3.40404 0.27875 4.98272 4.87242 4.79423 3.87459 5.40457 4.08360 4.72611 3.94667 5.09635 4.72715 4.61635 5.04767 4.73668 3.67207 3.91790 3.77625 6.03607 5.06658 14 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 15 3.67178 5.29423 4.34132 4.28291 5.17501 3.95214 5.27792 4.91327 4.39782 4.45487 5.55059 4.51897 0.23236 4.76495 4.54562 3.86400 4.16051 4.48430 6.16333 5.31349 15 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 16 2.83957 4.67419 4.06851 3.89373 4.60803 3.48408 4.84933 3.81702 3.85000 3.65657 4.69461 3.97299 4.24298 4.21963 4.05316 3.05024 0.48961 3.43941 5.98341 4.83475 16 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 17 3.27443 4.62722 4.93720 4.45634 1.47915 4.43064 4.60396 2.32320 4.31848 2.14676 3.44280 4.52011 4.77614 4.45258 4.41481 3.80820 3.53694 1.23576 4.91915 3.45894 17 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 18 3.50283 5.41944 3.44568 3.24942 4.66722 3.85997 4.39729 4.43310 3.03795 3.87037 4.92031 3.69990 4.44477 0.49320 3.29341 3.54456 3.81757 4.13600 5.84402 4.60182 18 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 19 0.43689 4.58352 4.14785 4.00943 4.72634 3.38616 4.94642 3.94827 4.04392 3.79867 4.79157 3.98070 4.18028 4.33341 4.22557 2.94192 3.25987 3.49319 6.08719 4.97088 19 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 20 2.69893 4.60828 3.82217 3.70350 4.71674 3.33371 4.77321 4.33857 3.82041 4.02393 4.92087 3.80101 4.12481 4.12487 4.05817 0.48273 3.22682 3.73715 6.04462 4.81649 20 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 21 3.61190 5.51079 3.82126 3.37857 5.03475 3.99251 4.22503 4.51420 0.46321 3.96909 4.93309 3.76349 4.47968 3.40785 2.72595 3.63686 3.83772 4.20244 5.87566 4.79338 21 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 22 3.85937 5.17391 5.09702 4.77316 3.45957 4.69560 5.26166 2.72120 4.54214 0.40074 3.36406 5.00014 5.05544 4.76592 4.61175 4.39116 4.13845 2.89794 5.50348 4.34640 22 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 23 3.40404 0.27875 4.98272 4.87242 4.79423 3.87459 5.40457 4.08360 4.72611 3.94667 5.09635 4.72715 4.61635 5.04767 4.73668 3.67207 3.91790 3.77625 6.03607 5.06658 23 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 24 3.85937 5.17391 5.09702 4.77316 3.45957 4.69560 5.26166 2.72120 4.54214 0.40074 3.36406 5.00014 5.05544 4.76592 4.61175 4.39116 4.13845 2.89794 5.50348 4.34640 24 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 25 3.51246 5.19502 4.29612 4.28034 5.34286 0.22313 5.32649 5.11767 4.53453 4.68196 5.68749 4.46343 4.59802 4.81500 4.67332 3.70549 4.03455 4.53672 6.25229 5.47588 25 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 26 4.42615 5.56625 5.04238 4.90984 3.46827 4.44606 4.76564 4.52791 4.65553 3.80835 5.12553 4.96524 5.01382 5.00832 4.67092 4.62532 4.76261 4.42901 0.25005 3.44732 26 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 27 3.85937 5.17391 5.09702 4.77316 3.45957 4.69560 5.26166 2.72120 4.54214 0.40074 3.36406 5.00014 5.05544 4.76592 4.61175 4.39116 4.13845 2.89794 5.50348 4.34640 27 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01199 4.43005 * 0.61958 0.77255 0.00000 * //